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The map label for this gene is yhcM [H]

Identifier: 150398142

GI number: 150398142

Start: 3093659

End: 3094888

Strand: Reverse

Name: yhcM [H]

Synonym: Smed_2945

Alternate gene names: 150398142

Gene position: 3094888-3093659 (Counterclockwise)

Preceding gene: 150398143

Following gene: 150398141

Centisome position: 81.83

GC content: 63.9

Gene sequence:

>1230_bases
ATGCGGCACGGGCGCCTTCCGCCGCCGCGGCCGCCATCCTCCTTCCCCAATCGGCCATGGCGGCCCGGACGCATCGTGCT
TAATCCAGACGACAGCATTCTTCGTAAGCTTGAGGGACACGTCGCAGCCGGCGAACGGCAGCGCGACCCCGCTCAGTTCG
CAATCGCAAGACGGCTGGACCGCCTGACCGCCGACCTTCTTGCGAGTCGCCCCTCGCGCAAGACAAACGCGCTCGGCTGG
CTCTTTGCCGCTCGCAAGAAGGAGCAGCCTCCGGTCAAGGGTCTTTATATCCACGGCGGCGTCGGGCGTGGCAAGACCAT
GCTCATGGACATGTTCTTCGATGCAGTGCCGATACGGCGCAAACGCCGCGCGCACTTCCATGAGTTCATGGCTGATGTGC
ACGAGCGCATCTACCGGCACCGGCAGAAGCTGAAGAACGGCGAGACGAAGCAGGCCGATCCCATCCCCCCCGTTGCCTCC
GATCTCCTGGGCGAGGCGCGGCTCCTGTGTTTCGACGAGTTCACTGTCACCGACATCGCCGATGCGATGATCCTTGCGCG
GCTCTTCGCCGAACTCTTCGCCAAGGGCTGCGTGCTCGTCGCCACCTCCAATGTCGAGCCGGACAATCTCTATCGCGACG
GCCTCAATCGGGGTCTTTTCCTTCCATTCATCGATCTCCTGAAGGCGCATGCCGAGATCATCTCGCTCGACACGCAAACG
GATTACCGACTCGGCAAGACCGGTGGGACGCCCGTCTGGCTCTCGCCGCTCGGACCCGAAACGGAAGCCGCCATGGACCG
CGCCTGGTATCGGGAGACGAGCGGAAAGCCGGGCTCCCCGGCCGAGATCGGCCGCAAGGGACGGACCATCCGCGTGCCTG
CGGCGGCCGGCCGGGCCGCGCGATTCACCTTTGCCGATCTTTGTGCGCAGCCGCTCGGAGCCTCCGACTATCTTGCGATT
GTCGCGCAATACAGCACCATCTTCGTCGACCATGTTCCGCAACTCGGACCGCACCTGCGCAACGAGACGAAGCGCTTTAT
CATCCTCGTCGACGCTCTTTACGATCAGGGCGCGCGCCTCTTCGCCTCGGCCGCGGCCGAACCGCAGCATCTGCTGACCG
CGAGAAAGGGCACGGAAGGGTTCGAATTCGACCGCACGGTTTCGCGCCTGATCGAGATGCAAAGCCAGGAATATGCTTCT
CAGCACCCGGAGAACGCACCGGCAGATTGA

Upstream 100 bases:

>100_bases
CGATGCGCGCTTCGACGGATCGACCAACGGCGGGCAGCCGGTCAGCCTCAGCCGCTAACGACCAAGTCAAGGCCGATCTC
GCGGCCGGACAAGAGGCGGA

Downstream 100 bases:

>100_bases
TTGCCGGACAGCAAAAATACTTACGTTTACGTAAGAATTTTACGATCTAACCGATTGAAATTGCTCTGCCAAAAAGTAGA
GATTGATATTTTTCCCTTTG

Product: AFG1 family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MRHGRLPPPRPPSSFPNRPWRPGRIVLNPDDSILRKLEGHVAAGERQRDPAQFAIARRLDRLTADLLASRPSRKTNALGW
LFAARKKEQPPVKGLYIHGGVGRGKTMLMDMFFDAVPIRRKRRAHFHEFMADVHERIYRHRQKLKNGETKQADPIPPVAS
DLLGEARLLCFDEFTVTDIADAMILARLFAELFAKGCVLVATSNVEPDNLYRDGLNRGLFLPFIDLLKAHAEIISLDTQT
DYRLGKTGGTPVWLSPLGPETEAAMDRAWYRETSGKPGSPAEIGRKGRTIRVPAAAGRAARFTFADLCAQPLGASDYLAI
VAQYSTIFVDHVPQLGPHLRNETKRFIILVDALYDQGARLFASAAAEPQHLLTARKGTEGFEFDRTVSRLIEMQSQEYAS
QHPENAPAD

Sequences:

>Translated_409_residues
MRHGRLPPPRPPSSFPNRPWRPGRIVLNPDDSILRKLEGHVAAGERQRDPAQFAIARRLDRLTADLLASRPSRKTNALGW
LFAARKKEQPPVKGLYIHGGVGRGKTMLMDMFFDAVPIRRKRRAHFHEFMADVHERIYRHRQKLKNGETKQADPIPPVAS
DLLGEARLLCFDEFTVTDIADAMILARLFAELFAKGCVLVATSNVEPDNLYRDGLNRGLFLPFIDLLKAHAEIISLDTQT
DYRLGKTGGTPVWLSPLGPETEAAMDRAWYRETSGKPGSPAEIGRKGRTIRVPAAAGRAARFTFADLCAQPLGASDYLAI
VAQYSTIFVDHVPQLGPHLRNETKRFIILVDALYDQGARLFASAAAEPQHLLTARKGTEGFEFDRTVSRLIEMQSQEYAS
QHPENAPAD
>Mature_409_residues
MRHGRLPPPRPPSSFPNRPWRPGRIVLNPDDSILRKLEGHVAAGERQRDPAQFAIARRLDRLTADLLASRPSRKTNALGW
LFAARKKEQPPVKGLYIHGGVGRGKTMLMDMFFDAVPIRRKRRAHFHEFMADVHERIYRHRQKLKNGETKQADPIPPVAS
DLLGEARLLCFDEFTVTDIADAMILARLFAELFAKGCVLVATSNVEPDNLYRDGLNRGLFLPFIDLLKAHAEIISLDTQT
DYRLGKTGGTPVWLSPLGPETEAAMDRAWYRETSGKPGSPAEIGRKGRTIRVPAAAGRAARFTFADLCAQPLGASDYLAI
VAQYSTIFVDHVPQLGPHLRNETKRFIILVDALYDQGARLFASAAAEPQHLLTARKGTEGFEFDRTVSRLIEMQSQEYAS
QHPENAPAD

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=400, Percent_Identity=38.25, Blast_Score=257, Evalue=2e-68,
Organism=Escherichia coli, GI1789627, Length=361, Percent_Identity=38.5041551246537, Blast_Score=244, Evalue=6e-66,
Organism=Caenorhabditis elegans, GI17505769, Length=419, Percent_Identity=34.1288782816229, Blast_Score=237, Evalue=9e-63,
Organism=Saccharomyces cerevisiae, GI6320783, Length=321, Percent_Identity=35.5140186915888, Blast_Score=198, Evalue=1e-51,
Organism=Drosophila melanogaster, GI20129913, Length=424, Percent_Identity=33.9622641509434, Blast_Score=221, Evalue=9e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 45683; Mature: 45683

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHGRLPPPRPPSSFPNRPWRPGRIVLNPDDSILRKLEGHVAAGERQRDPAQFAIARRLD
CCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
RLTADLLASRPSRKTNALGWLFAARKKEQPPVKGLYIHGGVGRGKTMLMDMFFDAVPIRR
HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCHHH
KRRAHFHEFMADVHERIYRHRQKLKNGETKQADPIPPVASDLLGEARLLCFDEFTVTDIA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHEEEECCCHHHHHH
DAMILARLFAELFAKGCVLVATSNVEPDNLYRDGLNRGLFLPFIDLLKAHAEIISLDTQT
HHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCCCC
DYRLGKTGGTPVWLSPLGPETEAAMDRAWYRETSGKPGSPAEIGRKGRTIRVPAAAGRAA
CCEECCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCCEEEEECCCCCCH
RFTFADLCAQPLGASDYLAIVAQYSTIFVDHVPQLGPHLRNETKRFIILVDALYDQGARL
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEEEHHHCCCHHH
FASAAAEPQHLLTARKGTEGFEFDRTVSRLIEMQSQEYASQHPENAPAD
HHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRHGRLPPPRPPSSFPNRPWRPGRIVLNPDDSILRKLEGHVAAGERQRDPAQFAIARRLD
CCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
RLTADLLASRPSRKTNALGWLFAARKKEQPPVKGLYIHGGVGRGKTMLMDMFFDAVPIRR
HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCHHH
KRRAHFHEFMADVHERIYRHRQKLKNGETKQADPIPPVASDLLGEARLLCFDEFTVTDIA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHEEEECCCHHHHHH
DAMILARLFAELFAKGCVLVATSNVEPDNLYRDGLNRGLFLPFIDLLKAHAEIISLDTQT
HHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCCCC
DYRLGKTGGTPVWLSPLGPETEAAMDRAWYRETSGKPGSPAEIGRKGRTIRVPAAAGRAA
CCEECCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCCEEEEECCCCCCH
RFTFADLCAQPLGASDYLAIVAQYSTIFVDHVPQLGPHLRNETKRFIILVDALYDQGARL
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEEEHHHCCCHHH
FASAAAEPQHLLTARKGTEGFEFDRTVSRLIEMQSQEYASQHPENAPAD
HHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]