| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
Click here to switch to the map view.
The map label for this gene is exoN [H]
Identifier: 150397905
GI number: 150397905
Start: 2815524
End: 2816411
Strand: Reverse
Name: exoN [H]
Synonym: Smed_2707
Alternate gene names: 150397905
Gene position: 2816411-2815524 (Counterclockwise)
Preceding gene: 150397908
Following gene: 150397899
Centisome position: 74.47
GC content: 61.49
Gene sequence:
>888_bases ATGACCGATAAGCGTAAAGTCCGCAAAGCCGTTTTCCCCGTCGCAGGCCTCGGGACGCGTTTCCTTCCCGCGACCAAGGC GGTCCCGAAGGAGATGCTGACGGTGGTGGACAAGCCGGTCATCCAATATGTTGTCGATGAAGCGCTGGAAGCCGGAATCG AGCATCTGATTTTCGTGACCGGCCGGAGCAAGGCCGTCATCGAGGATTATTTCGACATTCAGGTCGAATTGGACCAGACG CTGCGCGAGCGCAACAAGAAGGCGGAGATCGAGCTCCTCGAAGCCATGCTGCCGAAGGCCGGCACCACGAGCTTCACCCG CCAGCAGGCGCCGCTTGGCCTCGGACATGCGGTCTGGTGCGCCCGCGAGCTCGTCGGCAACGAGCCCTTCGCGCTGCTCT TGCCCGACATGATCATGAAGGGAGAGAAGGGCTGCCTGAAGGGAATGGTCGAACTCTATGAAGAGAGCGGCGGCAACGTC GTCGCCGTCGAGGAATGCGCGCCCGACCAGGCGCACAAATACGGGATCGTCGGAGTGGGCGAGACCGTCGGCGACGGCTT CAGGATCACCAGGATGGTCGAGAAGCCGGCAAAGGGGACGGCTCCGTCGAATTTCTTCATCAACGGCCGCTATATCCTGC AGCCGGAGATTTTCCCGATTCTGGAAACGCAGGAACGCGGCGCCGGCAATGAGATCCAGTTGACCGACGGCATGGTGAAG CTCGCAGAAGCACAGGCCTTTGCCGCCTATCACTTCCGCGGCGATACCTATGATTGCGGCGCCAAGGACGGTTTCATTCT GGCCAATGTCGCCTTCGCTCTCGAGCGCGGCGACATCCGCCCCACGGTCGAGGGACCGCTCAAGACGCTGCTTCAGGGCC TGAAGTGA
Upstream 100 bases:
>100_bases ACCGAGTCGTCTTCCTTCGCAAAAAATTGGCAATCGGCGACTAAATCAATTCAATTCCACCGTTTCAGGCTAGACTGAGA AGCACTGCAAGGAGGTGCCA
Downstream 100 bases:
>100_bases TTATCGATCAGATGACCGGCCGCGCCAGGAGGCGCGGCCTCTCCGGAGAGGCAAAGCGACACGTCATCGCCGCAGCGTCA GGCCGACGCCGACGCGCGTG
Product: UTP-glucose-1-phosphate uridylyltransferase
Products: NA
Alternate protein names: Alpha-D-glucosyl-1-phosphate uridylyltransferase; UDP-glucose pyrophosphorylase; UDPGP; Uridine diphosphoglucose pyrophosphorylase [H]
Number of amino acids: Translated: 295; Mature: 294
Protein sequence:
>295_residues MTDKRKVRKAVFPVAGLGTRFLPATKAVPKEMLTVVDKPVIQYVVDEALEAGIEHLIFVTGRSKAVIEDYFDIQVELDQT LRERNKKAEIELLEAMLPKAGTTSFTRQQAPLGLGHAVWCARELVGNEPFALLLPDMIMKGEKGCLKGMVELYEESGGNV VAVEECAPDQAHKYGIVGVGETVGDGFRITRMVEKPAKGTAPSNFFINGRYILQPEIFPILETQERGAGNEIQLTDGMVK LAEAQAFAAYHFRGDTYDCGAKDGFILANVAFALERGDIRPTVEGPLKTLLQGLK
Sequences:
>Translated_295_residues MTDKRKVRKAVFPVAGLGTRFLPATKAVPKEMLTVVDKPVIQYVVDEALEAGIEHLIFVTGRSKAVIEDYFDIQVELDQT LRERNKKAEIELLEAMLPKAGTTSFTRQQAPLGLGHAVWCARELVGNEPFALLLPDMIMKGEKGCLKGMVELYEESGGNV VAVEECAPDQAHKYGIVGVGETVGDGFRITRMVEKPAKGTAPSNFFINGRYILQPEIFPILETQERGAGNEIQLTDGMVK LAEAQAFAAYHFRGDTYDCGAKDGFILANVAFALERGDIRPTVEGPLKTLLQGLK >Mature_294_residues TDKRKVRKAVFPVAGLGTRFLPATKAVPKEMLTVVDKPVIQYVVDEALEAGIEHLIFVTGRSKAVIEDYFDIQVELDQTL RERNKKAEIELLEAMLPKAGTTSFTRQQAPLGLGHAVWCARELVGNEPFALLLPDMIMKGEKGCLKGMVELYEESGGNVV AVEECAPDQAHKYGIVGVGETVGDGFRITRMVEKPAKGTAPSNFFINGRYILQPEIFPILETQERGAGNEIQLTDGMVKL AEAQAFAAYHFRGDTYDCGAKDGFILANVAFALERGDIRPTVEGPLKTLLQGLK
Specific function: May Play A Role In Stationary Phase Survival. [C]
COG id: COG1210
COG function: function code M; UDP-glucose pyrophosphorylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UDPGP type 2 family [H]
Homologues:
Organism=Escherichia coli, GI1787488, Length=282, Percent_Identity=43.6170212765958, Blast_Score=225, Evalue=2e-60, Organism=Escherichia coli, GI1788355, Length=275, Percent_Identity=40, Blast_Score=203, Evalue=8e-54,
Paralogues:
None
Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 260 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005835 [H]
Pfam domain/function: PF00483 NTP_transferase [H]
EC number: =2.7.7.9 [H]
Molecular weight: Translated: 32327; Mature: 32196
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDKRKVRKAVFPVAGLGTRFLPATKAVPKEMLTVVDKPVIQYVVDEALEAGIEHLIFVT CCCHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE GRSKAVIEDYFDIQVELDQTLRERNKKAEIELLEAMLPKAGTTSFTRQQAPLGLGHAVWC CCCCEEEHHHHEEEEEHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHHHH ARELVGNEPFALLLPDMIMKGEKGCLKGMVELYEESGGNVVAVEECAPDQAHKYGIVGVG HHHHHCCCCCEEHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHCCCEEECC ETVGDGFRITRMVEKPAKGTAPSNFFINGRYILQPEIFPILETQERGAGNEIQLTDGMVK CCCCCCEEEHHHHHCCCCCCCCCCEEECCEEEECCCCEEEEECCCCCCCCEEEECCHHHH LAEAQAFAAYHFRGDTYDCGAKDGFILANVAFALERGDIRPTVEGPLKTLLQGLK HHHHHHHEEEEECCCCCCCCCCCCEEEEHHHHHHHCCCCCCCCHHHHHHHHHHCC >Mature Secondary Structure TDKRKVRKAVFPVAGLGTRFLPATKAVPKEMLTVVDKPVIQYVVDEALEAGIEHLIFVT CCHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE GRSKAVIEDYFDIQVELDQTLRERNKKAEIELLEAMLPKAGTTSFTRQQAPLGLGHAVWC CCCCEEEHHHHEEEEEHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHHHH ARELVGNEPFALLLPDMIMKGEKGCLKGMVELYEESGGNVVAVEECAPDQAHKYGIVGVG HHHHHCCCCCEEHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHCCCEEECC ETVGDGFRITRMVEKPAKGTAPSNFFINGRYILQPEIFPILETQERGAGNEIQLTDGMVK CCCCCCEEEHHHHHCCCCCCCCCCEEECCEEEECCCCEEEEECCCCCCCCEEEECCHHHH LAEAQAFAAYHFRGDTYDCGAKDGFILANVAFALERGDIRPTVEGPLKTLLQGLK HHHHHHHEEEEECCCCCCCCCCCCEEEEHHHHHHHCCCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8226645; 8226646; 8246891; 11481431 [H]