Click here to switch to the map view.

The map label for this gene is yjfH [C]

Identifier: 150397809

GI number: 150397809

Start: 2706857

End: 2707684

Strand: Reverse

Name: yjfH [C]

Synonym: Smed_2611

Alternate gene names: 150397809

Gene position: 2707684-2706857 (Counterclockwise)

Preceding gene: 150397810

Following gene: 150397806

Centisome position: 71.6

GC content: 66.91

Gene sequence:

>828_bases
ATGACGCGGCCTCTCCTTCGCATCGACGATCCGGCGGACCCGCGCATAGCCGGGTTGGTGTCGATCAAAGAGCGCGATTT
GACCGGCCGTCAGGGCCGCTTCATCGCCGAAGGTACCGTCGTGCTGAGAATGCTCGCCGCCGCGCACAGCGCGCGGCGCG
GTATCGCTGCCGAGGCGATCCTGCTCCTCGAGAGCCGGGTCTTCGGTTTGGCGGAGCTGCTCGCGCAGTTTCCGCCCGAC
GTCCCCCTCTATGTGGCGACCAGCGCAGTCTTCGATGCTATCGCCGGTTTCAATATGCATCGCGGCGTCCTGGCGCTAGG
CCGGCGCGACGCCGCGCCGGAGCAGGAGGCGCTGATTGCAGGGTTGCCGCAGTCGAGCCTCGTGCTCGCGGCCTGCGGCA
TATCGAACCACGACAATATGGGATCGCTGTTTCGCAATGCGGCGGCTTTCGGGGCCGATGCTGTGCTGATGGATATGGCG
AGCTGCGATCCGATGTACCGCAAGGCAATCCGCGTCTCCGTCGGGTCGGTGCTGACCCTGCCTTTTGCGCGCGAGGGTGG
TGCGGCAGAGCTGATCGGGCGCCTGCAGGCCGCAGACTTCGTCGTCTGGGGCCTGTCGCCGCGCGGCGCCGTGGACATCA
CCGCAATTCCGCCGGCGCCGCGCACAGCATTGCTGGTCGGTACCGAAGGCGAGGGGCTGCCCGAAGCTATCCTTTCGCAG
ATCCACACTGCCCGCATCCGCCAGCGGCCGGGCCTGGACAGCCTGAACGTGGCCATGGCGGCGGGCATCGCGCTGCACCA
GGTCGCAAATATCAACGGGAGGATTTGA

Upstream 100 bases:

>100_bases
TTCTACGGCAGCCTACCCGGCGCGGAGCCGCGGGCGATCGTTTTCGACATCAAGGCCGGCCGCATCGTCGCCGACGTCAC
GGTCAGGACCAACTGACGGC

Downstream 100 bases:

>100_bases
GCGGAACGGCCGGTCTCCCTTCGGCAGGCGGATGAGGGGGAATGCCGGCTGCGCCGAGCGCCTGATCTCATTCGGGCTCC
AGCATCTCCTTCACCCGCAA

Product: tRNA/rRNA methyltransferase SpoU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MTRPLLRIDDPADPRIAGLVSIKERDLTGRQGRFIAEGTVVLRMLAAAHSARRGIAAEAILLLESRVFGLAELLAQFPPD
VPLYVATSAVFDAIAGFNMHRGVLALGRRDAAPEQEALIAGLPQSSLVLAACGISNHDNMGSLFRNAAAFGADAVLMDMA
SCDPMYRKAIRVSVGSVLTLPFAREGGAAELIGRLQAADFVVWGLSPRGAVDITAIPPAPRTALLVGTEGEGLPEAILSQ
IHTARIRQRPGLDSLNVAMAAGIALHQVANINGRI

Sequences:

>Translated_275_residues
MTRPLLRIDDPADPRIAGLVSIKERDLTGRQGRFIAEGTVVLRMLAAAHSARRGIAAEAILLLESRVFGLAELLAQFPPD
VPLYVATSAVFDAIAGFNMHRGVLALGRRDAAPEQEALIAGLPQSSLVLAACGISNHDNMGSLFRNAAAFGADAVLMDMA
SCDPMYRKAIRVSVGSVLTLPFAREGGAAELIGRLQAADFVVWGLSPRGAVDITAIPPAPRTALLVGTEGEGLPEAILSQ
IHTARIRQRPGLDSLNVAMAAGIALHQVANINGRI
>Mature_274_residues
TRPLLRIDDPADPRIAGLVSIKERDLTGRQGRFIAEGTVVLRMLAAAHSARRGIAAEAILLLESRVFGLAELLAQFPPDV
PLYVATSAVFDAIAGFNMHRGVLALGRRDAAPEQEALIAGLPQSSLVLAACGISNHDNMGSLFRNAAAFGADAVLMDMAS
CDPMYRKAIRVSVGSVLTLPFAREGGAAELIGRLQAADFVVWGLSPRGAVDITAIPPAPRTALLVGTEGEGLPEAILSQI
HTARIRQRPGLDSLNVAMAAGIALHQVANINGRI

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 28933; Mature: 28802

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRPLLRIDDPADPRIAGLVSIKERDLTGRQGRFIAEGTVVLRMLAAAHSARRGIAAEAI
CCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCHHHHHH
LLLESRVFGLAELLAQFPPDVPLYVATSAVFDAIAGFNMHRGVLALGRRDAAPEQEALIA
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHCCHHHHCCCCCCCCHHHHEE
GLPQSSLVLAACGISNHDNMGSLFRNAAAFGADAVLMDMASCDPMYRKAIRVSVGSVLTL
CCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCEEEE
PFAREGGAAELIGRLQAADFVVWGLSPRGAVDITAIPPAPRTALLVGTEGEGLPEAILSQ
CCCCCCCHHHHHHHHHHCCEEEECCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHH
IHTARIRQRPGLDSLNVAMAAGIALHQVANINGRI
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TRPLLRIDDPADPRIAGLVSIKERDLTGRQGRFIAEGTVVLRMLAAAHSARRGIAAEAI
CCCCEEECCCCCCCEEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCHHHHHH
LLLESRVFGLAELLAQFPPDVPLYVATSAVFDAIAGFNMHRGVLALGRRDAAPEQEALIA
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHCCHHHHCCCCCCCCHHHHEE
GLPQSSLVLAACGISNHDNMGSLFRNAAAFGADAVLMDMASCDPMYRKAIRVSVGSVLTL
CCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCEEEE
PFAREGGAAELIGRLQAADFVVWGLSPRGAVDITAIPPAPRTALLVGTEGEGLPEAILSQ
CCCCCCCHHHHHHHHHHCCEEEECCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHH
IHTARIRQRPGLDSLNVAMAAGIALHQVANINGRI
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]