| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is secA [H]
Identifier: 150397716
GI number: 150397716
Start: 2613792
End: 2616503
Strand: Direct
Name: secA [H]
Synonym: Smed_2518
Alternate gene names: 150397716
Gene position: 2613792-2616503 (Clockwise)
Preceding gene: 150397709
Following gene: 150397717
Centisome position: 69.11
GC content: 61.28
Gene sequence:
>2712_bases ATGGTCAGTCTCGGCGGCTTTGCCCGCAAGTTGTTTGGTTCGGCCAACGATCGCCGCGTTCGCGGCTACAAGGGCCGGGT GGACGCCATCAATGCTCTCGAAGCCGAAATGAAGGCCCTGAGCGACGAGGCCCTTGCGGCGAAGACGGCGGAATTTCGTC GTGAAATCGCCGACGGAAAGTCATTGGACGACATTCTCGTGCCGGCCTTTGCAGTCGTGCGCGAGGCTGCGCGCCGCGTC CTCGGGCTGCGCCCCTTCGACGTCCAGCTGATTGGCGGCATGATCCTGCACGAGCGCGCCATCGCGGAAATGAAGACCGG CGAAGGCAAGACGCTCGTCGCCACCCTTCCCGTCTATCTCAACGCGCTCGCCGGCAAGGGTGTGCACGTGGTCACCGTCA ACGATTACCTCGCCCAGCGCGACGCCGGCATGATGGGCCGCATCTACGGCTTCCTCGGCATGTCCACAGGCGTTATCGTC CACGGCCTCTCCGACGAGCAGCGCCGCGACGCCTATGCCTGCGACGTCACCTATGCGACGAACAACGAGCTCGGCTTCGA TTATCTGCGCGACAACATGAAGTACGAACGCTCCCAGATGGTGCAGCGCGGCCACTTCTTCGCGATCGTCGACGAAGTGG ACTCGATTCTGGTGGACGAAGCACGCACGCCTCTCATCATCTCCGGGCCGCTTGACGACCGTTCCGACCTCTACAACACC ATCAACGAGTTCATTCCGCGCCTGTCTCCGGAAGACTACGAGATCGACGAAAAGCAGCGCTCGGCCAACTTCTCGGAGGA CGGCACCGAGAAACTCGAAAACATGCTGCGTGAGGCGGGCCTGTTGAAAGGCGAGTCGCTCTACGACATCGAGAACGTGG CGATCGTTCACCACGTCAACAACGCGCTCAAGGCCCACAAACTGTTCACGCGCGACAAGGACTATATCGTGCGAAACGGC GAGATCGTCATCATCGACGAGTTTACCGGTCGCATGATGCCGGGCCGCCGCTACTCCGAAGGGCAGCACCAGGCACTCGA AGCCAAGGAGAAGGTGCAGATCCAGCCCGAGAACCAGACACTCGCCTCGATCACCTTCCAGAACTATTTCCGCATGTACG ACAAGCTGGCCGGGATGACCGGTACTGCGGCGACGGAAGCGGAGGAATTCGGCAACATCTACGGCCTCGAAGTGCTCGAG GTGCCGACCAACCTGCCGATCAAGCGCATCGACGAGGACGACGAGGTCTATCGTACCGTCGGCGAAAAATTCAAGGCGAT TATCGAAGAGATCAAATCCGCGCATGAGCGCGGTCAACCGATGCTCGTCGGCACAACCTCCATCGAGAAGTCAGAGCTTC TCGCCGAAATGCTGAAGAAGGACGGGTTTTCGAAGTTTCAGGTGCTGAACGCCCGATATCACGAGCAGGAAGCCTTTATC GTCGCGCAGGCCGGCGTTCCGGGCGCCATTACGATCGCCACCAATATGGCCGGCCGCGGTACCGACATCCAGCTTGGCGG CAACCCCGACATGCGCATTCAGCAGGAACTGAGCGACGTCGAACCCGGTGCCGAGCGCGAATCACGCGAAAAGGCGATCC GCGAAGAGGTTCAAGTGCTCAAGGAAAAGGCTCTCGCCGCGGGGGGGCTTTACGTTCTTGCCACAGAACGGCACGAAAGC CGACGCATCGACAACCAGTTGCGCGGCCGCTCCGGCCGTCAGGGAGACCCGGGCCGCTCCAAATTCTACCTGTCCCTTCA GGACGATCTGATGCGCATCTTCGGCTCCGACCGTATGGACGGCATGCTGCAGAAGCTCGGCCTGAAGGAAGGCGAGGCGA TCGTTCACCCCTGGATCAACAAGGCGCTCGAACGCGCCCAGAAGAAGGTCGAGGCGCGCAACTTCGACATCCGCAAGAAC CTCCTGAAATACGACGACGTGCTCAACGACCAACGCAAGGTCATCTTCGAGCAGCGCATCGAACTGATGGATGCGGAGAG CGTCACCGATACGGTGACCGACATGCGCAACGAAGTGATCGAGGAAGTGGTCGCGAAGCGGATTCCGGAGCGTGCCTATG CCGAGAAATGGGATGCGGAGGGACTGAAGGCCGACGTCCAGCAATATCTCAATCTCGACCTGCCAATCGTCGAATGGGTT GCCGAAGAAGGCATCGCCGAGGATGATATCCGCGAGCGCATCACCGCCGCTGCGGACCAAGCGGCGGCCGATCGCGCCGA GCGTTTCGGTCCCGAGGTCATGCAATATGTTGAGCGTTCGGTCATTCTTCAGACGCTCGACCATCTCTGGCGCGAGCACA TCGTAAACCTCGACCATCTGAGATCGGTGATAGGCTTCCGCGGATACGCCCAGCGTGACCCGTTGCAGGAATACAAGTCC GAGGCTTTCGAGCTGTTCCAGGCGCTCCTCGGCAATCTGCGCCAGGCAGTGACGGCACAGCTGATGCGCGTCGAGCTGGT TCGCGAAGCTCCCGAGGAGCCTCAGCCCCTGCCGCCGATGCAGGCGCACCACATCGATCCCTTGACAGGCGAGGACGACT TTGCGCCCGCAGGCGACACTTTGCTGGCGGTCGCCCCCACGACCCGCGACCCGGCCGACCCGTCGACCTGGGGCAAGGTC TCGCGCAACGAAGCCTGCCCCTGCGGCTCCGGCAAGAAGTACAAGCATTGCCACGGCGTATACGAGGCTTGA
Upstream 100 bases:
>100_bases CCTCGCGTCCAGAACAGTTTCCGGGCGTTTCGCGGCGTGACGCGGTTTTTCGACCGCGCGCCCGAAAGCCAAGGCGACAA ATAAGGAAAGGACCATTCGC
Downstream 100 bases:
>100_bases TCGCGAGCCCCGTATGCCCAAGTCCGAATGCATGGAGCCGTAGCCATGGGAGCTGAAAAGTCTTCAGACAAATAAGCCGC AACAACGCATTTCCTGTTGT
Product: preprotein translocase subunit SecA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 903; Mature: 903
Protein sequence:
>903_residues MVSLGGFARKLFGSANDRRVRGYKGRVDAINALEAEMKALSDEALAAKTAEFRREIADGKSLDDILVPAFAVVREAARRV LGLRPFDVQLIGGMILHERAIAEMKTGEGKTLVATLPVYLNALAGKGVHVVTVNDYLAQRDAGMMGRIYGFLGMSTGVIV HGLSDEQRRDAYACDVTYATNNELGFDYLRDNMKYERSQMVQRGHFFAIVDEVDSILVDEARTPLIISGPLDDRSDLYNT INEFIPRLSPEDYEIDEKQRSANFSEDGTEKLENMLREAGLLKGESLYDIENVAIVHHVNNALKAHKLFTRDKDYIVRNG EIVIIDEFTGRMMPGRRYSEGQHQALEAKEKVQIQPENQTLASITFQNYFRMYDKLAGMTGTAATEAEEFGNIYGLEVLE VPTNLPIKRIDEDDEVYRTVGEKFKAIIEEIKSAHERGQPMLVGTTSIEKSELLAEMLKKDGFSKFQVLNARYHEQEAFI VAQAGVPGAITIATNMAGRGTDIQLGGNPDMRIQQELSDVEPGAERESREKAIREEVQVLKEKALAAGGLYVLATERHES RRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSDRMDGMLQKLGLKEGEAIVHPWINKALERAQKKVEARNFDIRKN LLKYDDVLNDQRKVIFEQRIELMDAESVTDTVTDMRNEVIEEVVAKRIPERAYAEKWDAEGLKADVQQYLNLDLPIVEWV AEEGIAEDDIRERITAAADQAAADRAERFGPEVMQYVERSVILQTLDHLWREHIVNLDHLRSVIGFRGYAQRDPLQEYKS EAFELFQALLGNLRQAVTAQLMRVELVREAPEEPQPLPPMQAHHIDPLTGEDDFAPAGDTLLAVAPTTRDPADPSTWGKV SRNEACPCGSGKKYKHCHGVYEA
Sequences:
>Translated_903_residues MVSLGGFARKLFGSANDRRVRGYKGRVDAINALEAEMKALSDEALAAKTAEFRREIADGKSLDDILVPAFAVVREAARRV LGLRPFDVQLIGGMILHERAIAEMKTGEGKTLVATLPVYLNALAGKGVHVVTVNDYLAQRDAGMMGRIYGFLGMSTGVIV HGLSDEQRRDAYACDVTYATNNELGFDYLRDNMKYERSQMVQRGHFFAIVDEVDSILVDEARTPLIISGPLDDRSDLYNT INEFIPRLSPEDYEIDEKQRSANFSEDGTEKLENMLREAGLLKGESLYDIENVAIVHHVNNALKAHKLFTRDKDYIVRNG EIVIIDEFTGRMMPGRRYSEGQHQALEAKEKVQIQPENQTLASITFQNYFRMYDKLAGMTGTAATEAEEFGNIYGLEVLE VPTNLPIKRIDEDDEVYRTVGEKFKAIIEEIKSAHERGQPMLVGTTSIEKSELLAEMLKKDGFSKFQVLNARYHEQEAFI VAQAGVPGAITIATNMAGRGTDIQLGGNPDMRIQQELSDVEPGAERESREKAIREEVQVLKEKALAAGGLYVLATERHES RRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSDRMDGMLQKLGLKEGEAIVHPWINKALERAQKKVEARNFDIRKN LLKYDDVLNDQRKVIFEQRIELMDAESVTDTVTDMRNEVIEEVVAKRIPERAYAEKWDAEGLKADVQQYLNLDLPIVEWV AEEGIAEDDIRERITAAADQAAADRAERFGPEVMQYVERSVILQTLDHLWREHIVNLDHLRSVIGFRGYAQRDPLQEYKS EAFELFQALLGNLRQAVTAQLMRVELVREAPEEPQPLPPMQAHHIDPLTGEDDFAPAGDTLLAVAPTTRDPADPSTWGKV SRNEACPCGSGKKYKHCHGVYEA >Mature_903_residues MVSLGGFARKLFGSANDRRVRGYKGRVDAINALEAEMKALSDEALAAKTAEFRREIADGKSLDDILVPAFAVVREAARRV LGLRPFDVQLIGGMILHERAIAEMKTGEGKTLVATLPVYLNALAGKGVHVVTVNDYLAQRDAGMMGRIYGFLGMSTGVIV HGLSDEQRRDAYACDVTYATNNELGFDYLRDNMKYERSQMVQRGHFFAIVDEVDSILVDEARTPLIISGPLDDRSDLYNT INEFIPRLSPEDYEIDEKQRSANFSEDGTEKLENMLREAGLLKGESLYDIENVAIVHHVNNALKAHKLFTRDKDYIVRNG EIVIIDEFTGRMMPGRRYSEGQHQALEAKEKVQIQPENQTLASITFQNYFRMYDKLAGMTGTAATEAEEFGNIYGLEVLE VPTNLPIKRIDEDDEVYRTVGEKFKAIIEEIKSAHERGQPMLVGTTSIEKSELLAEMLKKDGFSKFQVLNARYHEQEAFI VAQAGVPGAITIATNMAGRGTDIQLGGNPDMRIQQELSDVEPGAERESREKAIREEVQVLKEKALAAGGLYVLATERHES RRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSDRMDGMLQKLGLKEGEAIVHPWINKALERAQKKVEARNFDIRKN LLKYDDVLNDQRKVIFEQRIELMDAESVTDTVTDMRNEVIEEVVAKRIPERAYAEKWDAEGLKADVQQYLNLDLPIVEWV AEEGIAEDDIRERITAAADQAAADRAERFGPEVMQYVERSVILQTLDHLWREHIVNLDHLRSVIGFRGYAQRDPLQEYKS EAFELFQALLGNLRQAVTAQLMRVELVREAPEEPQPLPPMQAHHIDPLTGEDDFAPAGDTLLAVAPTTRDPADPSTWGKV SRNEACPCGSGKKYKHCHGVYEA
Specific function: Part of the Sec protein translocase complex. Interacts with the secYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the pr
COG id: COG0653
COG function: function code U; Preprotein translocase subunit SecA (ATPase, RNA helicase)
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasm (By similarity). Note=Distribution is 50-50 (By similarity) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secA family [H]
Homologues:
Organism=Escherichia coli, GI1786287, Length=905, Percent_Identity=53.8121546961326, Blast_Score=942, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004027 - InterPro: IPR000185 - InterPro: IPR020937 - InterPro: IPR011115 - InterPro: IPR014018 - InterPro: IPR011130 - InterPro: IPR011116 [H]
Pfam domain/function: PF02810 SEC-C; PF07517 SecA_DEAD; PF01043 SecA_PP_bind; PF07516 SecA_SW [H]
EC number: NA
Molecular weight: Translated: 101561; Mature: 101561
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: PS01312 SECA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSLGGFARKLFGSANDRRVRGYKGRVDAINALEAEMKALSDEALAAKTAEFRREIADGK CCCCHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SLDDILVPAFAVVREAARRVLGLRPFDVQLIGGMILHERAIAEMKTGEGKTLVATLPVYL CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH NALAGKGVHVVTVNDYLAQRDAGMMGRIYGFLGMSTGVIVHGLSDEQRRDAYACDVTYAT HHHCCCCEEEEEEHHHHHHHCCCHHHHHHHHHHCCCCEEEECCCCHHHCCCEEEEEEEEC NNELGFDYLRDNMKYERSQMVQRGHFFAIVDEVDSILVDEARTPLIISGPLDDRSDLYNT CCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCCCEEEECCCCCHHHHHHH INEFIPRLSPEDYEIDEKQRSANFSEDGTEKLENMLREAGLLKGESLYDIENVAIVHHVN HHHHHCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH NALKAHKLFTRDKDYIVRNGEIVIIDEFTGRMMPGRRYSEGQHQALEAKEKVQIQPENQT HHHHHHHHHHCCCCEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHEEECCCCCH LASITFQNYFRMYDKLAGMTGTAATEAEEFGNIYGLEVLEVPTNLPIKRIDEDDEVYRTV HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCEECEEEEECCCCCCHHHCCCHHHHHHHH GEKFKAIIEEIKSAHERGQPMLVGTTSIEKSELLAEMLKKDGFSKFQVLNARYHEQEAFI HHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEE VAQAGVPGAITIATNMAGRGTDIQLGGNPDMRIQQELSDVEPGAERESREKAIREEVQVL EEECCCCEEEEEEECCCCCCCEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHH KEKALAAGGLYVLATERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSDRMD HHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCHHH GMLQKLGLKEGEAIVHPWINKALERAQKKVEARNFDIRKNLLKYDDVLNDQRKVIFEQRI HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHH ELMDAESVTDTVTDMRNEVIEEVVAKRIPERAYAEKWDAEGLKADVQQYLNLDLPIVEWV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHH AEEGIAEDDIRERITAAADQAAADRAERFGPEVMQYVERSVILQTLDHLWREHIVNLDHL HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH RSVIGFRGYAQRDPLQEYKSEAFELFQALLGNLRQAVTAQLMRVELVREAPEEPQPLPPM HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC QAHHIDPLTGEDDFAPAGDTLLAVAPTTRDPADPSTWGKVSRNEACPCGSGKKYKHCHGV CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC YEA CCC >Mature Secondary Structure MVSLGGFARKLFGSANDRRVRGYKGRVDAINALEAEMKALSDEALAAKTAEFRREIADGK CCCCHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SLDDILVPAFAVVREAARRVLGLRPFDVQLIGGMILHERAIAEMKTGEGKTLVATLPVYL CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH NALAGKGVHVVTVNDYLAQRDAGMMGRIYGFLGMSTGVIVHGLSDEQRRDAYACDVTYAT HHHCCCCEEEEEEHHHHHHHCCCHHHHHHHHHHCCCCEEEECCCCHHHCCCEEEEEEEEC NNELGFDYLRDNMKYERSQMVQRGHFFAIVDEVDSILVDEARTPLIISGPLDDRSDLYNT CCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCCCEEEECCCCCHHHHHHH INEFIPRLSPEDYEIDEKQRSANFSEDGTEKLENMLREAGLLKGESLYDIENVAIVHHVN HHHHHCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH NALKAHKLFTRDKDYIVRNGEIVIIDEFTGRMMPGRRYSEGQHQALEAKEKVQIQPENQT HHHHHHHHHHCCCCEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHEEECCCCCH LASITFQNYFRMYDKLAGMTGTAATEAEEFGNIYGLEVLEVPTNLPIKRIDEDDEVYRTV HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCEECEEEEECCCCCCHHHCCCHHHHHHHH GEKFKAIIEEIKSAHERGQPMLVGTTSIEKSELLAEMLKKDGFSKFQVLNARYHEQEAFI HHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEE VAQAGVPGAITIATNMAGRGTDIQLGGNPDMRIQQELSDVEPGAERESREKAIREEVQVL EEECCCCEEEEEEECCCCCCCEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHH KEKALAAGGLYVLATERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSDRMD HHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCHHH GMLQKLGLKEGEAIVHPWINKALERAQKKVEARNFDIRKNLLKYDDVLNDQRKVIFEQRI HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHH ELMDAESVTDTVTDMRNEVIEEVVAKRIPERAYAEKWDAEGLKADVQQYLNLDLPIVEWV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHH AEEGIAEDDIRERITAAADQAAADRAERFGPEVMQYVERSVILQTLDHLWREHIVNLDHL HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH RSVIGFRGYAQRDPLQEYKSEAFELFQALLGNLRQAVTAQLMRVELVREAPEEPQPLPPM HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC QAHHIDPLTGEDDFAPAGDTLLAVAPTTRDPADPSTWGKVSRNEACPCGSGKKYKHCHGV CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC YEA CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11481430 [H]