Click here to switch to the map view.

The map label for this gene is yjfR [C]

Identifier: 150397667

GI number: 150397667

Start: 2548204

End: 2549082

Strand: Direct

Name: yjfR [C]

Synonym: Smed_2467

Alternate gene names: 150397667

Gene position: 2548204-2549082 (Clockwise)

Preceding gene: 150397666

Following gene: 150397668

Centisome position: 67.38

GC content: 63.71

Gene sequence:

>879_bases
GTGACCCCGCCCTCATCCATGCCGTTTTTGGAATCGCCGTTTTCAGAACCGCTCGCCGAGCGGCTGAGGGCGGCAGCCCG
CGGCGTTCGGCTCTACTGGCTGGGGCAGGCGGGATTCGTCATCCTGACGAGCCGCTTCCGCATCGCTATCGACCCCTATC
TCTCCGACAGTCTGGCGGAAAAATACAAAGGCAAGCGCTTCGAGCACGACCGCATGATGCCGGCACCGATCGCACCATCC
GAGCTCGGCCCGGTCGACCTCGTTCTCGTGACCCATCAGCACACCGACCATATGGATCCGCAAACCCTCGTGCCGATCGC
CGAAGCCAATCCGGATTGCCGCTTCCTCCTGCCCCGCGCCGCGCTGGGAGCTGCGCAGGAACGCATCGGCGTTCAGTCGG
AGCGGCTGGTTCCCATCGATGCGGGTGAGAGCGTCGAGCCTCTGCCCGGCTTCACCGTTAGCGCTATTCGTGCGGCCCAT
GAAACGCTCGAACGCACTCCCGAGGGCTGGCACCGGTTCCTGGGTTACGTGGTCGCAACCGATGGGGTGCGACTATACCA
TTCCGGCGACACGATCCCCCACGAAGGGCTTGTGGAGGAAGTGGCTCCCTTTCGGGTCGACCTCGCGCTGCTGCCGGTCA
ACGGCCGCCGCGCCGAGCTGACGGAGGCCGGCATTGCCGGCAATCTGACGCTGGATGAAGCATGCCTGCTGGCCGATCGG
ATCGGCGCACCCGACATGATCGCCCATCATTACGGCATGTTTGCCTTCAACACCGAATGCCCTGAAGCGATCGACACCAA
ATCGGAATCCGCCGATTGCAGGGTGAGGCTCCATCGGGCAAAGCTGTCGGTCGAATACCGACTGTCTCGAGCAGGATGA

Upstream 100 bases:

>100_bases
TTGCGACCAGTCATATCGGCGGCCTGACCGACGAGAGCGTCGGCAAGGCGACGAAGATTGCCGTTGCGAACCTTCTCTCG
GCCCTTGTGGAGGAGACCGC

Downstream 100 bases:

>100_bases
GGAAAAACGTGTACGGTTGCCCTCCCCCATCCCGCTCTCGCTTATTGGAACCGATCGCGATGATTTCAGGTCAGCGCCAC
CTGAAACCAGCGCGATCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MTPPSSMPFLESPFSEPLAERLRAAARGVRLYWLGQAGFVILTSRFRIAIDPYLSDSLAEKYKGKRFEHDRMMPAPIAPS
ELGPVDLVLVTHQHTDHMDPQTLVPIAEANPDCRFLLPRAALGAAQERIGVQSERLVPIDAGESVEPLPGFTVSAIRAAH
ETLERTPEGWHRFLGYVVATDGVRLYHSGDTIPHEGLVEEVAPFRVDLALLPVNGRRAELTEAGIAGNLTLDEACLLADR
IGAPDMIAHHYGMFAFNTECPEAIDTKSESADCRVRLHRAKLSVEYRLSRAG

Sequences:

>Translated_292_residues
MTPPSSMPFLESPFSEPLAERLRAAARGVRLYWLGQAGFVILTSRFRIAIDPYLSDSLAEKYKGKRFEHDRMMPAPIAPS
ELGPVDLVLVTHQHTDHMDPQTLVPIAEANPDCRFLLPRAALGAAQERIGVQSERLVPIDAGESVEPLPGFTVSAIRAAH
ETLERTPEGWHRFLGYVVATDGVRLYHSGDTIPHEGLVEEVAPFRVDLALLPVNGRRAELTEAGIAGNLTLDEACLLADR
IGAPDMIAHHYGMFAFNTECPEAIDTKSESADCRVRLHRAKLSVEYRLSRAG
>Mature_291_residues
TPPSSMPFLESPFSEPLAERLRAAARGVRLYWLGQAGFVILTSRFRIAIDPYLSDSLAEKYKGKRFEHDRMMPAPIAPSE
LGPVDLVLVTHQHTDHMDPQTLVPIAEANPDCRFLLPRAALGAAQERIGVQSERLVPIDAGESVEPLPGFTVSAIRAAHE
TLERTPEGWHRFLGYVVATDGVRLYHSGDTIPHEGLVEEVAPFRVDLALLPVNGRRAELTEAGIAGNLTLDEACLLADRI
GAPDMIAHHYGMFAFNTECPEAIDTKSESADCRVRLHRAKLSVEYRLSRAG

Specific function: Unknown

COG id: COG2220

COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0173 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR022877 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: NA

Molecular weight: Translated: 32150; Mature: 32019

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPPSSMPFLESPFSEPLAERLRAAARGVRLYWLGQAGFVILTSRFRIAIDPYLSDSLAE
CCCCCCCCCHHCCCHHHHHHHHHHHHCCEEEEEECCCCEEEEEECEEEEECCHHHHHHHH
KYKGKRFEHDRMMPAPIAPSELGPVDLVLVTHQHTDHMDPQTLVPIAEANPDCRFLLPRA
HHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCCCCEEECCHH
ALGAAQERIGVQSERLVPIDAGESVEPLPGFTVSAIRAAHETLERTPEGWHRFLGYVVAT
HHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHEEEEE
DGVRLYHSGDTIPHEGLVEEVAPFRVDLALLPVNGRRAELTEAGIAGNLTLDEACLLADR
CCEEEEECCCCCCCCCHHHHHCCEEEEEEEEECCCCCCCHHHCCCCCCCCHHHHHHHHHH
IGAPDMIAHHYGMFAFNTECPEAIDTKSESADCRVRLHRAKLSVEYRLSRAG
CCCCHHHHHHCCEEEECCCCCHHHCCCCCCCCEEEEEEEEEEEEEEEEECCC
>Mature Secondary Structure 
TPPSSMPFLESPFSEPLAERLRAAARGVRLYWLGQAGFVILTSRFRIAIDPYLSDSLAE
CCCCCCCCHHCCCHHHHHHHHHHHHCCEEEEEECCCCEEEEEECEEEEECCHHHHHHHH
KYKGKRFEHDRMMPAPIAPSELGPVDLVLVTHQHTDHMDPQTLVPIAEANPDCRFLLPRA
HHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCCCCEEECCHH
ALGAAQERIGVQSERLVPIDAGESVEPLPGFTVSAIRAAHETLERTPEGWHRFLGYVVAT
HHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHEEEEE
DGVRLYHSGDTIPHEGLVEEVAPFRVDLALLPVNGRRAELTEAGIAGNLTLDEACLLADR
CCEEEEECCCCCCCCCHHHHHCCEEEEEEEEECCCCCCCHHHCCCCCCCCHHHHHHHHHH
IGAPDMIAHHYGMFAFNTECPEAIDTKSESADCRVRLHRAKLSVEYRLSRAG
CCCCHHHHHHCCEEEECCCCCHHHCCCCCCCCEEEEEEEEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA