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The map label for this gene is ugpA [C]

Identifier: 150397655

GI number: 150397655

Start: 2536994

End: 2537935

Strand: Reverse

Name: ugpA [C]

Synonym: Smed_2455

Alternate gene names: 150397655

Gene position: 2537935-2536994 (Counterclockwise)

Preceding gene: 150397656

Following gene: 150397654

Centisome position: 67.11

GC content: 61.78

Gene sequence:

>942_bases
ATGTCGCAGTCGTTATCCGTGCCGGCGTCACAGGAAAGGGGAGCGGCCAGCCCGACTGCCATGTCCGATCGCTGGTTCTC
GATCCTTCTTATCGTGCCTGCGATGCTGGTCATTCTTGTCTTCGCGCTGTTGCCGCTCGCCTATGCGCTCGACGTGTCAT
TTCGGTTTGCCGACCTGACCCGAGGCCGGATCGGGGACTTCGTCGGCCTCGACAACTATCGGGCGGTACTGCATGACAGA
GCCTTCTGGAGTTCGGTCGGGGTCACGCTCAAGTTCACGCTGACGGCTGTCACCCTCGAAATGGTGCTCGGCATCGCGAT
TGCCTTCCTGATCCACGGCGCAACCGCCGGCAAGGGCATCATCCGCAGCCTGATGATCCTGCCGCTTGCCACCTCGGCGG
CGGTGACGGGCCTGTTCTGGCGCTATCTCTACGACACCCAGTTCGGATTGATAAACCATTTCCTCGGTCTCGTCGGCCTG
CCGGAGCCCAACTGGCTCGGCGATTACACGATCGCCCTCTGGTCGGTCATCCTGTTCGATGTCTGGCAGTGGACACCCTT
CGTCGCGCTAATCGCGCTCGCCGGACTCCAGGCCTTGCCCAAGGAGCCTTTCGAGGCGGCCGAACTCGATGGCGCCAGCA
CATTTCGGGTGCTTCGCACGCTGACCTTCCCAATGCTGAAACCGGTGCTGTTCCTCGTCCTCGTGTTGCGCACCATAGAC
AGCGTCCGGTTGTACGATGCGGTCGCGGTGCTCACGCGCGGAGGCCCGGGCACGGTGACCGAAACCATGACCTTCTATCT
CTACCGCACCGGCCTGAAGCTGTTCCGGATGGATTATGCGTCCACCATGGCGATCTTCTTCCTCTACGCCATGCTGGTCG
CAAGCCTCTTCGCGCTCCGTCCGCTGCTCACCCAATTTTCGTCCCGTGCATCGGAAGGCTGA

Upstream 100 bases:

>100_bases
TCGGACACGTCGCTCAAAGCCTTGCATGGCGGGCGCTCTGCCCGCCATGCGCTTGACCGAAAGGCGCGGGCGGTCCCGCG
CAATCTTCTGGAGGAGTTTG

Downstream 100 bases:

>100_bases
GGAGAGCGCCATGCTGCAACGTGAATCAAGTTTCGCCAAGGAAGCGCTCCGCTACGGCCTGATCGTGCTCGTCCTCGGCT
TCATCGTCTTCCCGATCGCC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MSQSLSVPASQERGAASPTAMSDRWFSILLIVPAMLVILVFALLPLAYALDVSFRFADLTRGRIGDFVGLDNYRAVLHDR
AFWSSVGVTLKFTLTAVTLEMVLGIAIAFLIHGATAGKGIIRSLMILPLATSAAVTGLFWRYLYDTQFGLINHFLGLVGL
PEPNWLGDYTIALWSVILFDVWQWTPFVALIALAGLQALPKEPFEAAELDGASTFRVLRTLTFPMLKPVLFLVLVLRTID
SVRLYDAVAVLTRGGPGTVTETMTFYLYRTGLKLFRMDYASTMAIFFLYAMLVASLFALRPLLTQFSSRASEG

Sequences:

>Translated_313_residues
MSQSLSVPASQERGAASPTAMSDRWFSILLIVPAMLVILVFALLPLAYALDVSFRFADLTRGRIGDFVGLDNYRAVLHDR
AFWSSVGVTLKFTLTAVTLEMVLGIAIAFLIHGATAGKGIIRSLMILPLATSAAVTGLFWRYLYDTQFGLINHFLGLVGL
PEPNWLGDYTIALWSVILFDVWQWTPFVALIALAGLQALPKEPFEAAELDGASTFRVLRTLTFPMLKPVLFLVLVLRTID
SVRLYDAVAVLTRGGPGTVTETMTFYLYRTGLKLFRMDYASTMAIFFLYAMLVASLFALRPLLTQFSSRASEG
>Mature_312_residues
SQSLSVPASQERGAASPTAMSDRWFSILLIVPAMLVILVFALLPLAYALDVSFRFADLTRGRIGDFVGLDNYRAVLHDRA
FWSSVGVTLKFTLTAVTLEMVLGIAIAFLIHGATAGKGIIRSLMILPLATSAAVTGLFWRYLYDTQFGLINHFLGLVGLP
EPNWLGDYTIALWSVILFDVWQWTPFVALIALAGLQALPKEPFEAAELDGASTFRVLRTLTFPMLKPVLFLVLVLRTIDS
VRLYDAVAVLTRGGPGTVTETMTFYLYRTGLKLFRMDYASTMAIFFLYAMLVASLFALRPLLTQFSSRASEG

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=290, Percent_Identity=27.9310344827586, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1787570, Length=244, Percent_Identity=30.327868852459, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1790465, Length=190, Percent_Identity=29.4736842105263, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34541; Mature: 34410

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQSLSVPASQERGAASPTAMSDRWFSILLIVPAMLVILVFALLPLAYALDVSFRFADLT
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGRIGDFVGLDNYRAVLHDRAFWSSVGVTLKFTLTAVTLEMVLGIAIAFLIHGATAGKGI
HCHHCCCCCCCHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
IRSLMILPLATSAAVTGLFWRYLYDTQFGLINHFLGLVGLPEPNWLGDYTIALWSVILFD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
VWQWTPFVALIALAGLQALPKEPFEAAELDGASTFRVLRTLTFPMLKPVLFLVLVLRTID
HHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVRLYDAVAVLTRGGPGTVTETMTFYLYRTGLKLFRMDYASTMAIFFLYAMLVASLFALR
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLLTQFSSRASEG
HHHHHHHHHCCCC
>Mature Secondary Structure 
SQSLSVPASQERGAASPTAMSDRWFSILLIVPAMLVILVFALLPLAYALDVSFRFADLT
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH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HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]