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The map label for this gene is ycjP [C]

Identifier: 150397654

GI number: 150397654

Start: 2536123

End: 2536983

Strand: Reverse

Name: ycjP [C]

Synonym: Smed_2454

Alternate gene names: 150397654

Gene position: 2536983-2536123 (Counterclockwise)

Preceding gene: 150397655

Following gene: 150397653

Centisome position: 67.08

GC content: 60.63

Gene sequence:

>861_bases
ATGCTGCAACGTGAATCAAGTTTCGCCAAGGAAGCGCTCCGCTACGGCCTGATCGTGCTCGTCCTCGGCTTCATCGTCTT
CCCGATCGCCTGGATGATCATCACCTCGTTCAAACCGGCCGATGCGATCATGGTGTCGCCGCCGCGCTTCCTGTTCACCC
CGACGCTCGAGAACTACGTTCACGCGATCTATGACAAGAACTTCCTTTTCTACATAAAGAATACGCTCTTCATCTCCGTC
GCCTCGACGATCATCGTCGTCGTCACGGGATCGCTCGCCGCCTATAGTTTCGCCCGCTACAATGTCGGCGACGGCCACCT
GCTCTTCTTCATCCTGTCGACCAAGATGTTTCCGGCGATCGCGGTGATCCTGCCCTACTTCCTGATCTTCCGGGAAGTCG
GCAAGACCGGCATCGGCAGTTTCCTGGGCATAGGCCTCGACCGGCCAGGCGCGCTGATCATTTCCTACACGGTGTTCAAC
CTGCCCTTCGCGATCTGGCTCCTGGTGTCCTTCTTCCAGGACATTCCGCGCGAACTCGAACACTCCGCCCGCCTCGATGG
CCTGTCGCGCCTGAAGGTCCTGGCAAAGGTCGTGTGCCCGCTGGCCGCCCCGGGCATCGCGGTCACCGGCGTTTTCACGC
TGATCTTCAGCTGGAACGAGTTCCTCTTCGCCTACATCCTGACCCGCAAGGCCGCGAGCACCGTGACCGTAGGCGTCGAG
TCCTTCTTCACCCTGCAGGGCATTCTCTGGGGGCCCGTTGCGGCTGCCGCCACCATCAGCGTCCTGCCGATGCTGGTCTT
CGTTCTGGCCATGCAACGCTACATGGTCCGCGGCCTGACCTTCGGCGCTGTGAGAGGATAA

Upstream 100 bases:

>100_bases
ATCTTCTTCCTCTACGCCATGCTGGTCGCAAGCCTCTTCGCGCTCCGTCCGCTGCTCACCCAATTTTCGTCCCGTGCATC
GGAAGGCTGAGGAGAGCGCC

Downstream 100 bases:

>100_bases
GATCATGAGCTTCAGTCAAGGCTGGGATACCGGCTTCCGCGTCATCCTCATCTATGTCGGCATCGTCTTCGTCTGGCTCG
GCATGATCGAGCCGTATTTC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MLQRESSFAKEALRYGLIVLVLGFIVFPIAWMIITSFKPADAIMVSPPRFLFTPTLENYVHAIYDKNFLFYIKNTLFISV
ASTIIVVVTGSLAAYSFARYNVGDGHLLFFILSTKMFPAIAVILPYFLIFREVGKTGIGSFLGIGLDRPGALIISYTVFN
LPFAIWLLVSFFQDIPRELEHSARLDGLSRLKVLAKVVCPLAAPGIAVTGVFTLIFSWNEFLFAYILTRKAASTVTVGVE
SFFTLQGILWGPVAAAATISVLPMLVFVLAMQRYMVRGLTFGAVRG

Sequences:

>Translated_286_residues
MLQRESSFAKEALRYGLIVLVLGFIVFPIAWMIITSFKPADAIMVSPPRFLFTPTLENYVHAIYDKNFLFYIKNTLFISV
ASTIIVVVTGSLAAYSFARYNVGDGHLLFFILSTKMFPAIAVILPYFLIFREVGKTGIGSFLGIGLDRPGALIISYTVFN
LPFAIWLLVSFFQDIPRELEHSARLDGLSRLKVLAKVVCPLAAPGIAVTGVFTLIFSWNEFLFAYILTRKAASTVTVGVE
SFFTLQGILWGPVAAAATISVLPMLVFVLAMQRYMVRGLTFGAVRG
>Mature_286_residues
MLQRESSFAKEALRYGLIVLVLGFIVFPIAWMIITSFKPADAIMVSPPRFLFTPTLENYVHAIYDKNFLFYIKNTLFISV
ASTIIVVVTGSLAAYSFARYNVGDGHLLFFILSTKMFPAIAVILPYFLIFREVGKTGIGSFLGIGLDRPGALIISYTVFN
LPFAIWLLVSFFQDIPRELEHSARLDGLSRLKVLAKVVCPLAAPGIAVTGVFTLIFSWNEFLFAYILTRKAASTVTVGVE
SFFTLQGILWGPVAAAATISVLPMLVFVLAMQRYMVRGLTFGAVRG

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=277, Percent_Identity=32.8519855595668, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI1790464, Length=220, Percent_Identity=32.2727272727273, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1789860, Length=276, Percent_Identity=25.3623188405797, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31622; Mature: 31622

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQRESSFAKEALRYGLIVLVLGFIVFPIAWMIITSFKPADAIMVSPPRFLFTPTLENYV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEECCCHHHHH
HAIYDKNFLFYIKNTLFISVASTIIVVVTGSLAAYSFARYNVGDGHLLFFILSTKMFPAI
HHHHCCCEEEEEHHHHHHHHHHHHHHHEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
AVILPYFLIFREVGKTGIGSFLGIGLDRPGALIISYTVFNLPFAIWLLVSFFQDIPRELE
HHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
HSARLDGLSRLKVLAKVVCPLAAPGIAVTGVFTLIFSWNEFLFAYILTRKAASTVTVGVE
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHH
SFFTLQGILWGPVAAAATISVLPMLVFVLAMQRYMVRGLTFGAVRG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLQRESSFAKEALRYGLIVLVLGFIVFPIAWMIITSFKPADAIMVSPPRFLFTPTLENYV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEECCCHHHHH
HAIYDKNFLFYIKNTLFISVASTIIVVVTGSLAAYSFARYNVGDGHLLFFILSTKMFPAI
HHHHCCCEEEEEHHHHHHHHHHHHHHHEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
AVILPYFLIFREVGKTGIGSFLGIGLDRPGALIISYTVFNLPFAIWLLVSFFQDIPRELE
HHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
HSARLDGLSRLKVLAKVVCPLAAPGIAVTGVFTLIFSWNEFLFAYILTRKAASTVTVGVE
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHH
SFFTLQGILWGPVAAAATISVLPMLVFVLAMQRYMVRGLTFGAVRG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]