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The map label for this gene is yddE [C]

Identifier: 150397134

GI number: 150397134

Start: 1985080

End: 1985997

Strand: Reverse

Name: yddE [C]

Synonym: Smed_1932

Alternate gene names: 150397134

Gene position: 1985997-1985080 (Counterclockwise)

Preceding gene: 150397135

Following gene: 150397123

Centisome position: 52.51

GC content: 61.87

Gene sequence:

>918_bases
ATGGCACGGCGCTACGCGATTTACGATGTCTTCACCGAGAAGCGTCTAGCGGGAAATCCTCTCGCGGTGGTGTTCGATGC
CGATGGACTGACCGAAGAAGCCATGCAGGCTATCGCTCAGGAGTTCAACCTATCCGAAACCGTCTTCCTCCTGCGGCCCG
AAAGCGCCGCCCATTCCGCTCGCCTTCGGATATTCACCCCGGCACATGAACTGCCCTTTGCGGGACACCCGACCGTAGGA
GCGGCTGTTGCCATCGCCGAAACGGCCTATGGTGATGCCAACAGCGCGCTCGAGCTGATGCAGGTGCTGGAAGAAAGCGT
TGGGCCGGTCCGCGCGGTCGTCAGACTTAAACCGGGTTCGGCGACCTTCGCGGAGTTCGACCTGCCGCGCAAACCGAGCC
GGCTTGAGGCGCAGTTCGACCGGCAGGAGATCGCCGATGCACTTGCGCTCAAGGCGACGCAGGTCGGCTTCGAAAATCAT
GTACCGTCTTTCTGGAGTGCCGGCGTTCCGTTCGTGATGGTGCCCCTTCACGATATTCGCTCGGTGGCGTCTGTGGAGTT
CGATCCGCAGCGTTGGGAACACCTGGCGCCGCTTGCCGAAGGACGGCTTGCCGCTGCCTATCTCTACTGTCGCGGCGGCA
TCAATCACATGGCCCGTTTTCATACCCGGATGTTCGCTCCGGGCATGGGGCTCGTCGAGGATCCGGCGACCGGTTCGGCT
GCGGCCGCCCTTTCGGGCGCCGTCAATTTTTTCGACGGCCTGGTCGACGGCCACCATCCCATGCTGATCGAGCAGGGCGT
GGAAATGGGCCGTCCTTCGATTATTCACCTGCATCTGAATATTGCGGAGGGGAAAATCGCGAGTGCGCGGATCGGTGGCC
ATGCGGTAAAACTTGCCGAGGGCGAGCTGGCGGTCTGA

Upstream 100 bases:

>100_bases
CCGCGAGAGTACGCACCCGGCGTCCAGGCTTCGGCAGACGGACCGTTGTGATTCCGCATCCGGACCTATCCACGGCGACC
CGGACGATAAGGGGACATGC

Downstream 100 bases:

>100_bases
TTTTTTTGCAGAAAACTTGGCAAGGCCGCTGGACAAGCCAGGCGAACGCCATTATACGCCCCACCAGACCGCAGCAAAGC
GGTCCGGCGGGTGATTAGCT

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MARRYAIYDVFTEKRLAGNPLAVVFDADGLTEEAMQAIAQEFNLSETVFLLRPESAAHSARLRIFTPAHELPFAGHPTVG
AAVAIAETAYGDANSALELMQVLEESVGPVRAVVRLKPGSATFAEFDLPRKPSRLEAQFDRQEIADALALKATQVGFENH
VPSFWSAGVPFVMVPLHDIRSVASVEFDPQRWEHLAPLAEGRLAAAYLYCRGGINHMARFHTRMFAPGMGLVEDPATGSA
AAALSGAVNFFDGLVDGHHPMLIEQGVEMGRPSIIHLHLNIAEGKIASARIGGHAVKLAEGELAV

Sequences:

>Translated_305_residues
MARRYAIYDVFTEKRLAGNPLAVVFDADGLTEEAMQAIAQEFNLSETVFLLRPESAAHSARLRIFTPAHELPFAGHPTVG
AAVAIAETAYGDANSALELMQVLEESVGPVRAVVRLKPGSATFAEFDLPRKPSRLEAQFDRQEIADALALKATQVGFENH
VPSFWSAGVPFVMVPLHDIRSVASVEFDPQRWEHLAPLAEGRLAAAYLYCRGGINHMARFHTRMFAPGMGLVEDPATGSA
AAALSGAVNFFDGLVDGHHPMLIEQGVEMGRPSIIHLHLNIAEGKIASARIGGHAVKLAEGELAV
>Mature_304_residues
ARRYAIYDVFTEKRLAGNPLAVVFDADGLTEEAMQAIAQEFNLSETVFLLRPESAAHSARLRIFTPAHELPFAGHPTVGA
AVAIAETAYGDANSALELMQVLEESVGPVRAVVRLKPGSATFAEFDLPRKPSRLEAQFDRQEIADALALKATQVGFENHV
PSFWSAGVPFVMVPLHDIRSVASVEFDPQRWEHLAPLAEGRLAAAYLYCRGGINHMARFHTRMFAPGMGLVEDPATGSAA
AALSGAVNFFDGLVDGHHPMLIEQGVEMGRPSIIHLHLNIAEGKIASARIGGHAVKLAEGELAV

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=273, Percent_Identity=31.1355311355311, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI74316009, Length=249, Percent_Identity=32.1285140562249, Blast_Score=86, Evalue=4e-17,
Organism=Escherichia coli, GI1787737, Length=314, Percent_Identity=29.6178343949045, Blast_Score=81, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17542160, Length=273, Percent_Identity=26.7399267399267, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17542154, Length=273, Percent_Identity=26.7399267399267, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6321818, Length=311, Percent_Identity=27.6527331189711, Blast_Score=105, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 32865; Mature: 32734

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARRYAIYDVFTEKRLAGNPLAVVFDADGLTEEAMQAIAQEFNLSETVFLLRPESAAHSA
CCCEEEEEHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCC
RLRIFTPAHELPFAGHPTVGAAVAIAETAYGDANSALELMQVLEESVGPVRAVVRLKPGS
EEEEEECHHCCCCCCCCCCCHHEEEHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCC
ATFAEFDLPRKPSRLEAQFDRQEIADALALKATQVGFENHVPSFWSAGVPFVMVPLHDIR
CCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHCCCCEEEEEHHHHH
SVASVEFDPQRWEHLAPLAEGRLAAAYLYCRGGINHMARFHTRMFAPGMGLVEDPATGSA
HHHCCCCCHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCH
AAALSGAVNFFDGLVDGHHPMLIEQGVEMGRPSIIHLHLNIAEGKIASARIGGHAVKLAE
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEEEECCCCEEEEEECCEEEEEEC
GELAV
CCCCC
>Mature Secondary Structure 
ARRYAIYDVFTEKRLAGNPLAVVFDADGLTEEAMQAIAQEFNLSETVFLLRPESAAHSA
CCEEEEEHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCC
RLRIFTPAHELPFAGHPTVGAAVAIAETAYGDANSALELMQVLEESVGPVRAVVRLKPGS
EEEEEECHHCCCCCCCCCCCHHEEEHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCC
ATFAEFDLPRKPSRLEAQFDRQEIADALALKATQVGFENHVPSFWSAGVPFVMVPLHDIR
CCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHCCCCEEEEEHHHHH
SVASVEFDPQRWEHLAPLAEGRLAAAYLYCRGGINHMARFHTRMFAPGMGLVEDPATGSA
HHHCCCCCHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCH
AAALSGAVNFFDGLVDGHHPMLIEQGVEMGRPSIIHLHLNIAEGKIASARIGGHAVKLAE
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEEEECCCCEEEEEECCEEEEEEC
GELAV
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]