| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is 150397123
Identifier: 150397123
GI number: 150397123
Start: 1978160
End: 1978906
Strand: Reverse
Name: 150397123
Synonym: Smed_1921
Alternate gene names: NA
Gene position: 1978906-1978160 (Counterclockwise)
Preceding gene: 150397134
Following gene: 150397119
Centisome position: 52.33
GC content: 60.51
Gene sequence:
>747_bases ATGGCTGAAACATCGATCGAATGGACTGATGCAACGTGGAATCCCGTAGCCGGCTGCTCGATAATGAGTGCGGGGTGCAC CAACTGCTACGCGATGCGTATGGCGGCGCGCCTTGAAGCCATGGGGCTCGAGAAGTACCGAGGCCTGACACGCAAGAGCG GCGGTCGAGCGAAATGGACGGGCGACCTCTATCTCGACGAGAGCGCGCTTTCTGTGCCATCGACCTGGTCAAAGCCACGG AATGTATTCGTCAACTCGATGTCCGACCTATTTCACCCAGACGTGCCGGTGGAGTTCATCCGAAAAGTGTGGCGGGCAAT GGCTGATACGCGGCGCCACACATACCAGATCCTCACCAAGCGGCCGGATCGCATGGCGTATATCCTGCGCGACGGTTTCG ATGTTCTGCCGAATGTCTGGCTTGGCTCCAGCGTAGAAGACGGGCGTGTGATCGATCGCCTCGACGAGCTTCGCCGAGTG CCTGCCGCAATTCGCTTCGTCTCGTTTGAACCGCTCATCGGCTCCGTTGCCGCGGGCCGACTGGATGGCATCGACTGGGC TATTGTCGGCGGCGAATCTGGCCCGAAGGCGCGGCCCATGGATCCGGTATGGATCGACGAGGTTTTCGAAATGTGCTCGG AGGCGGGCTCTGCCTTCTTCTTCAAGCAATGGGGCGGCAGGAACAAGAAAGCGACGGGGCGTTCCTATCGCGGACGCACC TGGGACGCGATGCCCGCGACCGCTTAA
Upstream 100 bases:
>100_bases ATTTCGGCCTCAAGATCGGCCTGAGAGAGACTGGCGGCGCGCAACCGATCTTTAACCAAATCGCAACTATCGCTTATCTC TGAAGGTCGGGGAGCGTCCT
Downstream 100 bases:
>100_bases AATAGGCGCCGTTGACCATCGTCGTTTGCTGCGGTGTTCCAAATCCGATGCGCAAGGGTGTGACTGGCGACCAGCAATAG CCAATACAGGTGCTGGTCTT
Product: phage Gp37Gp68 family protein
Products: NA
Alternate protein names: Phage /Gp; Bacteriophage Protein Gp; Gp37gp68 Family Protein; ABC Transporter Subunit; Phage ; ABC Transporter; Bacteriophage Protein; Phage Protein Gp; Radical SAM Domain-Containing Protein; Phage Protein; Phage Gp
Number of amino acids: Translated: 248; Mature: 247
Protein sequence:
>248_residues MAETSIEWTDATWNPVAGCSIMSAGCTNCYAMRMAARLEAMGLEKYRGLTRKSGGRAKWTGDLYLDESALSVPSTWSKPR NVFVNSMSDLFHPDVPVEFIRKVWRAMADTRRHTYQILTKRPDRMAYILRDGFDVLPNVWLGSSVEDGRVIDRLDELRRV PAAIRFVSFEPLIGSVAAGRLDGIDWAIVGGESGPKARPMDPVWIDEVFEMCSEAGSAFFFKQWGGRNKKATGRSYRGRT WDAMPATA
Sequences:
>Translated_248_residues MAETSIEWTDATWNPVAGCSIMSAGCTNCYAMRMAARLEAMGLEKYRGLTRKSGGRAKWTGDLYLDESALSVPSTWSKPR NVFVNSMSDLFHPDVPVEFIRKVWRAMADTRRHTYQILTKRPDRMAYILRDGFDVLPNVWLGSSVEDGRVIDRLDELRRV PAAIRFVSFEPLIGSVAAGRLDGIDWAIVGGESGPKARPMDPVWIDEVFEMCSEAGSAFFFKQWGGRNKKATGRSYRGRT WDAMPATA >Mature_247_residues AETSIEWTDATWNPVAGCSIMSAGCTNCYAMRMAARLEAMGLEKYRGLTRKSGGRAKWTGDLYLDESALSVPSTWSKPRN VFVNSMSDLFHPDVPVEFIRKVWRAMADTRRHTYQILTKRPDRMAYILRDGFDVLPNVWLGSSVEDGRVIDRLDELRRVP AAIRFVSFEPLIGSVAAGRLDGIDWAIVGGESGPKARPMDPVWIDEVFEMCSEAGSAFFFKQWGGRNKKATGRSYRGRTW DAMPATA
Specific function: Unknown
COG id: COG4422
COG function: function code S; Bacteriophage protein gp37
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27814; Mature: 27683
Theoretical pI: Translated: 8.90; Mature: 8.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAETSIEWTDATWNPVAGCSIMSAGCTNCYAMRMAARLEAMGLEKYRGLTRKSGGRAKWT CCCCCCEECCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCEEE GDLYLDESALSVPSTWSKPRNVFVNSMSDLFHPDVPVEFIRKVWRAMADTRRHTYQILTK CCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC RPDRMAYILRDGFDVLPNVWLGSSVEDGRVIDRLDELRRVPAAIRFVSFEPLIGSVAAGR CCHHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCHHHHHHHHCC LDGIDWAIVGGESGPKARPMDPVWIDEVFEMCSEAGSAFFFKQWGGRNKKATGRSYRGRT CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEHHCCCCCCCCCCCCCCCCC WDAMPATA CCCCCCCC >Mature Secondary Structure AETSIEWTDATWNPVAGCSIMSAGCTNCYAMRMAARLEAMGLEKYRGLTRKSGGRAKWT CCCCCEECCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCEEE GDLYLDESALSVPSTWSKPRNVFVNSMSDLFHPDVPVEFIRKVWRAMADTRRHTYQILTK CCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC RPDRMAYILRDGFDVLPNVWLGSSVEDGRVIDRLDELRRVPAAIRFVSFEPLIGSVAAGR CCHHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCHHHHHHHHCC LDGIDWAIVGGESGPKARPMDPVWIDEVFEMCSEAGSAFFFKQWGGRNKKATGRSYRGRT CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEHHCCCCCCCCCCCCCCCCC WDAMPATA CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA