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The map label for this gene is ycbB [H]

Identifier: 150396784

GI number: 150396784

Start: 1672262

End: 1674157

Strand: Reverse

Name: ycbB [H]

Synonym: Smed_1575

Alternate gene names: 150396784

Gene position: 1674157-1672262 (Counterclockwise)

Preceding gene: 150396786

Following gene: 150396782

Centisome position: 44.27

GC content: 62.39

Gene sequence:

>1896_bases
ATGAGAGTTATCAAGTCGGCGGCGGTTGTCGCGCTCATGAGCGGGTGTGCGGTTGCAGCCATGGATGTGCAGCCGGCGTC
CGCGCTCACCTTCATGGACTTCATCCGCGGAGGCAAGAAGCGCGACGTGCAGGAACAGGTGCAGCCCCGCCAGCAGCGTC
CGGGCGTGGATATGTTTGCTCCGCAACAATTGGAGCAGAGGGCAGCAAAGCCGCCGCGCATCACCGGTCCTCGGTACTAC
ACCTATAAGGCGGATGCGCTCCGCCGGATTGCAACGGACCGGTTGCTCGATCCCGTGGTCACCGGCTCGGTGGCCAACGG
AGCGCTGCCGCCGATGGTGCGTACGCCGCTTTCCGAGGTGCGCCAGTTTCTGCCGCAGATCGATGTGCGCGCCCCGGGCG
AGGTCGCAAAAGCGATCGAGACCTTCTACGGCACACGAACTGATTTCCTCTGGATCGATGGCGTGGGCGTCAACGGCCGC
GCCAAGGCGGCGCTTGCTGCCCTGTCCGCCGCCGCGAAGGTCGGCCTGGACCCGCGCGATTATGCCGTCGCTGTCCCGCC
GGAGGATTTCGATCGCGGCGACATGATCGCCCGCGAAAAGGATCTGGTGCGGTTCGAGATCGCGTTGTCCGCAGCCATGC
TCACCTATGTTCAGGACACGGTGCGCGGCCGGATCGATCCGAACCGGATTTCCGGCTATCACGACTTCAAACGGAAGAGC
GTCGATCTTCTTGCCTTTCTGGAGAAGATCGAGGCATCCGGTGACGTTGCCGCGCTCATCGAAAGCCGGAATCCCAAGAG
CGCTCAGTTCGAGGCATTGAGGCAGGAACTCGAACGACTTCGGACCCAGGTCGAAGCGACGCCTCGGGTCGAGATCGCAC
CGGGGACGCTGTTGAAGCCCGGCGAGAGCAATCCGGAACTCGCCAATGTGATCGCCGGGATCAAGCTTAAAGCCTCGGAT
GCGCTGAAGACGGAGCATGCAGTCGTGCTCGCCGCCTATGGCGGGACGCCGGATTACACGCCCGAGCTTGTGCCTGTCGT
CGAAGCCTTCCAGAAGGAACATGGCCTCAAGGCGGACGGCATTGTCGGCCAGGCGTCGATACGCGCTATCACCGGCGGTG
ACACGATCGGGGAGAAGATCAGAAAAATCGAAATCGCGATGGAGCAGGCGCGCTGGTTGCCCGACGGGCTCGGCGACCGC
TATGTCTTCATCAACCAGCCGGCCTTCACCGCCTCCTATACGGAGCAGGGCGCCGAGCAGTTCTCCATGCGTGTCGTCGT
CGGCTCCAAGGCCAATCAGACCTACTTCTTCCAGGACGAGATTCAGACGGTCGAAGTCAATCCATATTGGGGCGTTCCGC
AGTCGATCATCGTCAATGAGATGCTGCCGAAGCTCAGAAGCGACCCCGGTTACCTTGACCGCATGGGCTACCAGGTGGAA
GTCGGTGGCCGGGTCGTTTCTTCGACCGCTGTGAACTGGTACGGCTCGACGAACTCCATCGCGGTGCGCCAACCGCCGAG
TAGCGACAATGCATTGGGTGAACTCAAGATTCTATTCCCCAACGCCCACGCGATCTACATGCACGATACGCCGTCGAAGA
GCTTTTTCAAGCGCGATCAGCGGGCTCTCAGCCATGGCTGCGTGCGCCTCGCCGACCCGCGCCGCATGGCGGCGGCCGTA
CTTGGCGTGAGCGTCGACGAGGTCGGCGAAGAGATATCCGGCGGTCGCAACAAGGCACTCCCGGTATCCGCCAAGGTCCC
GGTCTATGTCTCCTACTTCACCGCCTGGCCGAACAAGGACGGAACCGTCGAGTATTTCAATGACGTTTACGAGCGCGACA
TGTACGTGAACCGCGCCTTCGAGGCGACGCGCAAGGCGCGGCACGCGGAAGGGTGA

Upstream 100 bases:

>100_bases
CATTCACCATCCTTTTCTATAACTCTCGGTGCACGAGGGCGTGGCGAGAATCTGGCGGCGGCTGCATTCGGCGGCAAGCA
ATACGGGGACGTTTGTATTT

Downstream 100 bases:

>100_bases
GGAAAGCGGGCCCTTCTAAACTGCGGGCACGTATCATTTCGGCTTGCGCGAGAGCACTGCCTCGACCAGATCCGGCGTCA
GTTCGTCGAAATGACCGATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 631; Mature: 631

Protein sequence:

>631_residues
MRVIKSAAVVALMSGCAVAAMDVQPASALTFMDFIRGGKKRDVQEQVQPRQQRPGVDMFAPQQLEQRAAKPPRITGPRYY
TYKADALRRIATDRLLDPVVTGSVANGALPPMVRTPLSEVRQFLPQIDVRAPGEVAKAIETFYGTRTDFLWIDGVGVNGR
AKAALAALSAAAKVGLDPRDYAVAVPPEDFDRGDMIAREKDLVRFEIALSAAMLTYVQDTVRGRIDPNRISGYHDFKRKS
VDLLAFLEKIEASGDVAALIESRNPKSAQFEALRQELERLRTQVEATPRVEIAPGTLLKPGESNPELANVIAGIKLKASD
ALKTEHAVVLAAYGGTPDYTPELVPVVEAFQKEHGLKADGIVGQASIRAITGGDTIGEKIRKIEIAMEQARWLPDGLGDR
YVFINQPAFTASYTEQGAEQFSMRVVVGSKANQTYFFQDEIQTVEVNPYWGVPQSIIVNEMLPKLRSDPGYLDRMGYQVE
VGGRVVSSTAVNWYGSTNSIAVRQPPSSDNALGELKILFPNAHAIYMHDTPSKSFFKRDQRALSHGCVRLADPRRMAAAV
LGVSVDEVGEEISGGRNKALPVSAKVPVYVSYFTAWPNKDGTVEYFNDVYERDMYVNRAFEATRKARHAEG

Sequences:

>Translated_631_residues
MRVIKSAAVVALMSGCAVAAMDVQPASALTFMDFIRGGKKRDVQEQVQPRQQRPGVDMFAPQQLEQRAAKPPRITGPRYY
TYKADALRRIATDRLLDPVVTGSVANGALPPMVRTPLSEVRQFLPQIDVRAPGEVAKAIETFYGTRTDFLWIDGVGVNGR
AKAALAALSAAAKVGLDPRDYAVAVPPEDFDRGDMIAREKDLVRFEIALSAAMLTYVQDTVRGRIDPNRISGYHDFKRKS
VDLLAFLEKIEASGDVAALIESRNPKSAQFEALRQELERLRTQVEATPRVEIAPGTLLKPGESNPELANVIAGIKLKASD
ALKTEHAVVLAAYGGTPDYTPELVPVVEAFQKEHGLKADGIVGQASIRAITGGDTIGEKIRKIEIAMEQARWLPDGLGDR
YVFINQPAFTASYTEQGAEQFSMRVVVGSKANQTYFFQDEIQTVEVNPYWGVPQSIIVNEMLPKLRSDPGYLDRMGYQVE
VGGRVVSSTAVNWYGSTNSIAVRQPPSSDNALGELKILFPNAHAIYMHDTPSKSFFKRDQRALSHGCVRLADPRRMAAAV
LGVSVDEVGEEISGGRNKALPVSAKVPVYVSYFTAWPNKDGTVEYFNDVYERDMYVNRAFEATRKARHAEG
>Mature_631_residues
MRVIKSAAVVALMSGCAVAAMDVQPASALTFMDFIRGGKKRDVQEQVQPRQQRPGVDMFAPQQLEQRAAKPPRITGPRYY
TYKADALRRIATDRLLDPVVTGSVANGALPPMVRTPLSEVRQFLPQIDVRAPGEVAKAIETFYGTRTDFLWIDGVGVNGR
AKAALAALSAAAKVGLDPRDYAVAVPPEDFDRGDMIAREKDLVRFEIALSAAMLTYVQDTVRGRIDPNRISGYHDFKRKS
VDLLAFLEKIEASGDVAALIESRNPKSAQFEALRQELERLRTQVEATPRVEIAPGTLLKPGESNPELANVIAGIKLKASD
ALKTEHAVVLAAYGGTPDYTPELVPVVEAFQKEHGLKADGIVGQASIRAITGGDTIGEKIRKIEIAMEQARWLPDGLGDR
YVFINQPAFTASYTEQGAEQFSMRVVVGSKANQTYFFQDEIQTVEVNPYWGVPQSIIVNEMLPKLRSDPGYLDRMGYQVE
VGGRVVSSTAVNWYGSTNSIAVRQPPSSDNALGELKILFPNAHAIYMHDTPSKSFFKRDQRALSHGCVRLADPRRMAAAV
LGVSVDEVGEEISGGRNKALPVSAKVPVYVSYFTAWPNKDGTVEYFNDVYERDMYVNRAFEATRKARHAEG

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=299, Percent_Identity=32.1070234113712, Blast_Score=160, Evalue=3e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 69322; Mature: 69322

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVIKSAAVVALMSGCAVAAMDVQPASALTFMDFIRGGKKRDVQEQVQPRQQRPGVDMFA
CCHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHCHHHHCCCCCCCC
PQQLEQRAAKPPRITGPRYYTYKADALRRIATDRLLDPVVTGSVANGALPPMVRTPLSEV
HHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHH
RQFLPQIDVRAPGEVAKAIETFYGTRTDFLWIDGVGVNGRAKAALAALSAAAKVGLDPRD
HHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCC
YAVAVPPEDFDRGDMIAREKDLVRFEIALSAAMLTYVQDTVRGRIDPNRISGYHDFKRKS
CEEECCCCCCCCCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHH
VDLLAFLEKIEASGDVAALIESRNPKSAQFEALRQELERLRTQVEATPRVEIAPGTLLKP
HHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEECC
GESNPELANVIAGIKLKASDALKTEHAVVLAAYGGTPDYTPELVPVVEAFQKEHGLKADG
CCCCCHHHHHHHCCEEECCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCC
IVGQASIRAITGGDTIGEKIRKIEIAMEQARWLPDGLGDRYVFINQPAFTASYTEQGAEQ
EECCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHH
FSMRVVVGSKANQTYFFQDEIQTVEVNPYWGVPQSIIVNEMLPKLRSDPGYLDRMGYQVE
EEEEEEECCCCCCEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCEEE
VGGRVVSSTAVNWYGSTNSIAVRQPPSSDNALGELKILFPNAHAIYMHDTPSKSFFKRDQ
ECCEEEECCEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCEEEEEECCCCHHHHHHHH
RALSHGCVRLADPRRMAAAVLGVSVDEVGEEISGGRNKALPVSAKVPVYVSYFTAWPNKD
HHHHHCCEEECCHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEECCCCEEEEEEEECCCCC
GTVEYFNDVYERDMYVNRAFEATRKARHAEG
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRVIKSAAVVALMSGCAVAAMDVQPASALTFMDFIRGGKKRDVQEQVQPRQQRPGVDMFA
CCHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHCHHHHCCCCCCCC
PQQLEQRAAKPPRITGPRYYTYKADALRRIATDRLLDPVVTGSVANGALPPMVRTPLSEV
HHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHH
RQFLPQIDVRAPGEVAKAIETFYGTRTDFLWIDGVGVNGRAKAALAALSAAAKVGLDPRD
HHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCC
YAVAVPPEDFDRGDMIAREKDLVRFEIALSAAMLTYVQDTVRGRIDPNRISGYHDFKRKS
CEEECCCCCCCCCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHH
VDLLAFLEKIEASGDVAALIESRNPKSAQFEALRQELERLRTQVEATPRVEIAPGTLLKP
HHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEECC
GESNPELANVIAGIKLKASDALKTEHAVVLAAYGGTPDYTPELVPVVEAFQKEHGLKADG
CCCCCHHHHHHHCCEEECCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCC
IVGQASIRAITGGDTIGEKIRKIEIAMEQARWLPDGLGDRYVFINQPAFTASYTEQGAEQ
EECCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHH
FSMRVVVGSKANQTYFFQDEIQTVEVNPYWGVPQSIIVNEMLPKLRSDPGYLDRMGYQVE
EEEEEEECCCCCCEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCEEE
VGGRVVSSTAVNWYGSTNSIAVRQPPSSDNALGELKILFPNAHAIYMHDTPSKSFFKRDQ
ECCEEEECCEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCEEEEEECCCCHHHHHHHH
RALSHGCVRLADPRRMAAAVLGVSVDEVGEEISGGRNKALPVSAKVPVYVSYFTAWPNKD
HHHHHCCEEECCHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEECCCCEEEEEEEECCCCC
GTVEYFNDVYERDMYVNRAFEATRKARHAEG
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]