| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is 150396786
Identifier: 150396786
GI number: 150396786
Start: 1676091
End: 1676699
Strand: Reverse
Name: 150396786
Synonym: Smed_1577
Alternate gene names: NA
Gene position: 1676699-1676091 (Counterclockwise)
Preceding gene: 150396787
Following gene: 150396784
Centisome position: 44.33
GC content: 62.56
Gene sequence:
>609_bases ATGACGATTATCGCAACGGTCGAGGAATTGCAGGCACTTTATGGCGGGACGAGCGAGGCCTCGATCGTCAAGGTGACGGA TTCGCTGACGGCCGAATACCGGCAGATGATCGAAGCGTCGCCCTTTGCGGCGCTCGCGACGGTCGGCCCGGAGGGTTTGG ATTGTTCGCCGCGCGGCGATGACCGATGCGTCGTCCGTGTCGCCGACGACAAGACCGTGCTGATGCCGGATTGGCGAGGC AACAATCGGGTCGATTCCCTTGCCAATATCGTACGGGATCCGAGGGTGGCATTGCTGTTTCTCGTGCCCGGATCGAATAC GACCATCCGCATCAACGGCACGGCCGTCGTGAGCATCGACCAGGCCTTGACCGATTCTTTCGAGGTTGACGGCAAGCACC CGCGCAGCGTCGTCGTGGTGACGATCGGAGAGGTCTATTTCCAGTGTGCGCGGGCTCTGATCCGGTCGCAGCTCTGGAAT GCGGAGCGGTTCGTCGGCTCCGCTTCGCTTCCGACGCCGGGCGCGCTGCTGAAGGCTGCCAAGGCGGATTTCGACAAGGA AAGCTACGATCGGGAGTGGGCCGGCCGCGCGGTGAAGACGATGTGGTAG
Upstream 100 bases:
>100_bases CGCCTGATGGCGTCATCAGACCGTCATGCTATTCCTCGACACGTGCGCGTAGAAATGACGCTTGGGCGTAGCGGCGGCGT CATTGGCAGGAGGGATGAAA
Downstream 100 bases:
>100_bases GCGGCCGCGGCGGCCATATGCCCAGCCGCGGCCGCCTGTGGTCTGTCAGGCCGGTCCGATCATGGTTTCCGGACGCACCA CGGCATCGAATTCCTCGTCC
Product: pyridoxamine 5'-phosphate oxidase-like FMN-binding protein
Products: NA
Alternate protein names: Phosphohydrolase; Pyridoxamine 5-Phosphate Oxidase; Pyridoxamine 5-Phosphate Oxidase-Like Protein; Pyridoxamine 5-Phosphate Oxidase-Related Protein; NTP Pyrophosphohydrolase; Pyridoxine Biosynthesis Protein; Phenylacetate-CoA Oxygenase/Reductase PaaK Subunit; Transcriptional Regulator AraC Family; Pyridoxamine 5-Phosphate Oxidase Family; Fmn Flavoprotein; Pyridoxamine 5\-Phosphate Oxidase Family Protein; Pyridoxamine 5-Phosphate Oxidase-Related
Number of amino acids: Translated: 202; Mature: 201
Protein sequence:
>202_residues MTIIATVEELQALYGGTSEASIVKVTDSLTAEYRQMIEASPFAALATVGPEGLDCSPRGDDRCVVRVADDKTVLMPDWRG NNRVDSLANIVRDPRVALLFLVPGSNTTIRINGTAVVSIDQALTDSFEVDGKHPRSVVVVTIGEVYFQCARALIRSQLWN AERFVGSASLPTPGALLKAAKADFDKESYDREWAGRAVKTMW
Sequences:
>Translated_202_residues MTIIATVEELQALYGGTSEASIVKVTDSLTAEYRQMIEASPFAALATVGPEGLDCSPRGDDRCVVRVADDKTVLMPDWRG NNRVDSLANIVRDPRVALLFLVPGSNTTIRINGTAVVSIDQALTDSFEVDGKHPRSVVVVTIGEVYFQCARALIRSQLWN AERFVGSASLPTPGALLKAAKADFDKESYDREWAGRAVKTMW >Mature_201_residues TIIATVEELQALYGGTSEASIVKVTDSLTAEYRQMIEASPFAALATVGPEGLDCSPRGDDRCVVRVADDKTVLMPDWRGN NRVDSLANIVRDPRVALLFLVPGSNTTIRINGTAVVSIDQALTDSFEVDGKHPRSVVVVTIGEVYFQCARALIRSQLWNA ERFVGSASLPTPGALLKAAKADFDKESYDREWAGRAVKTMW
Specific function: Unknown
COG id: COG3576
COG function: function code R; Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21990; Mature: 21859
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIIATVEELQALYGGTSEASIVKVTDSLTAEYRQMIEASPFAALATVGPEGLDCSPRGD CEEEEEHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC DRCVVRVADDKTVLMPDWRGNNRVDSLANIVRDPRVALLFLVPGSNTTIRINGTAVVSID CEEEEEEECCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCEEEECCEEEEEEC QALTDSFEVDGKHPRSVVVVTIGEVYFQCARALIRSQLWNAERFVGSASLPTPGALLKAA HHHCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHH KADFDKESYDREWAGRAVKTMW HCCCCCHHCCHHHHCCCHHCCC >Mature Secondary Structure TIIATVEELQALYGGTSEASIVKVTDSLTAEYRQMIEASPFAALATVGPEGLDCSPRGD EEEEEHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC DRCVVRVADDKTVLMPDWRGNNRVDSLANIVRDPRVALLFLVPGSNTTIRINGTAVVSID CEEEEEEECCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCEEEECCEEEEEEC QALTDSFEVDGKHPRSVVVVTIGEVYFQCARALIRSQLWNAERFVGSASLPTPGALLKAA HHHCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHH KADFDKESYDREWAGRAVKTMW HCCCCCHHCCHHHHCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA