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The map label for this gene is ydcN [C]

Identifier: 150401456

GI number: 150401456

Start: 1061049

End: 1061537

Strand: Reverse

Name: ydcN [C]

Synonym: Maeo_1032

Alternate gene names: 150401456

Gene position: 1061537-1061049 (Counterclockwise)

Preceding gene: 150401461

Following gene: 150401454

Centisome position: 67.64

GC content: 35.17

Gene sequence:

>489_bases
ATGCAGTGCGAACTATGTGGAAAAGAAACAACAAAACTCCTTACTTCAAGAATTGAAGGGGTAGAGATGCAGGTATGCGA
CGATTGTGCTAAATTTGGGACAATTATACAAAATTATTCGAGAATGCCCGATACAAAAGGCAGAAGAAGTGGTAGGGGTA
CTGAATATTCATCATCAAGACCGAAAAAACCAAGAAAAGATTTATTTGATACATTAAAGATGGTAGTAGAAGATTACGGA
ACCGTAATAAAACAGGCAAGGGAAAAAAGAGGATGGACACTAAAAGAACTTGCAAAACAGATAGGTATAAAGGAATCTAC
ACTACATAAAATTGAGAGAAATGAGTTAGAGCCAGAAGAAAAATATGTAAAAAGATTAGAAAAAGAATTAAATATAACAC
TTTATGAAGGGAGCTCCGAGGAATACGAAGGGGGCGCCGATGATAGCGAATTTACTTTGGGCGATATGATAAAAATTAAA
AGAAAATAG

Upstream 100 bases:

>100_bases
AAATAGTATAGACATAATATTTTAACTTAATAATAAATACAAAAAATATGGGCATTTAAATAACATATTTTTTGAACAAA
ATATAAATGATGGTGATATT

Downstream 100 bases:

>100_bases
TTTAAATATTTTCGATATTTCTTTTTATTTTTTATTTTTTTAATTAATTTTAGTTCCATTAACCTCTCCAATTAATGACT
TATATATATTATCTTTTTTA

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MQCELCGKETTKLLTSRIEGVEMQVCDDCAKFGTIIQNYSRMPDTKGRRSGRGTEYSSSRPKKPRKDLFDTLKMVVEDYG
TVIKQAREKRGWTLKELAKQIGIKESTLHKIERNELEPEEKYVKRLEKELNITLYEGSSEEYEGGADDSEFTLGDMIKIK
RK

Sequences:

>Translated_162_residues
MQCELCGKETTKLLTSRIEGVEMQVCDDCAKFGTIIQNYSRMPDTKGRRSGRGTEYSSSRPKKPRKDLFDTLKMVVEDYG
TVIKQAREKRGWTLKELAKQIGIKESTLHKIERNELEPEEKYVKRLEKELNITLYEGSSEEYEGGADDSEFTLGDMIKIK
RK
>Mature_162_residues
MQCELCGKETTKLLTSRIEGVEMQVCDDCAKFGTIIQNYSRMPDTKGRRSGRGTEYSSSRPKKPRKDLFDTLKMVVEDYG
TVIKQAREKRGWTLKELAKQIGIKESTLHKIERNELEPEEKYVKRLEKELNITLYEGSSEEYEGGADDSEFTLGDMIKIK
RK

Specific function: Unknown

COG id: COG1813

COG function: function code K; Predicted transcription factor, homolog of eukaryotic MBF1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004451
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 18695; Mature: 18695

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQCELCGKETTKLLTSRIEGVEMQVCDDCAKFGTIIQNYSRMPDTKGRRSGRGTEYSSSR
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PKKPRKDLFDTLKMVVEDYGTVIKQAREKRGWTLKELAKQIGIKESTLHKIERNELEPEE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHH
KYVKRLEKELNITLYEGSSEEYEGGADDSEFTLGDMIKIKRK
HHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure
MQCELCGKETTKLLTSRIEGVEMQVCDDCAKFGTIIQNYSRMPDTKGRRSGRGTEYSSSR
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PKKPRKDLFDTLKMVVEDYGTVIKQAREKRGWTLKELAKQIGIKESTLHKIERNELEPEE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHH
KYVKRLEKELNITLYEGSSEEYEGGADDSEFTLGDMIKIKRK
HHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]