| Definition | Methanococcus aeolicus Nankai-3, complete genome. |
|---|---|
| Accession | NC_009635 |
| Length | 1,569,500 |
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The map label for this gene is cdhD [H]
Identifier: 150400648
GI number: 150400648
Start: 227479
End: 228669
Strand: Direct
Name: cdhD [H]
Synonym: Maeo_0210
Alternate gene names: 150400648
Gene position: 227479-228669 (Clockwise)
Preceding gene: 150400645
Following gene: 150400649
Centisome position: 14.49
GC content: 37.28
Gene sequence:
>1191_bases ATGGATTTTGATAGTTTAATGGAATTAGTAAAAAAAACTGGGCGAATTGAAATAAACGATATAAGTATAACTGCGGATGA ACTTATAATAAATATACCTTCTGCGCCACCCATGAGAATTCCACAAACTCCTGCAATGAAGCAGACGCTGGCAGAATCGG GAGTTTATGAAGATTTAAAAATAAGTATCCCTGATGTAGATTGGGAGCTCCCAATAAATACCTACAAAGGAAACATAAGG GAAGTGCAATTTGGACGACCCAAATCCGAAGGAGGAAGGGGAAAAGTCATAAAAATCGGAGGGCAAAAGGCACTTTATAG ATTTGAAGAACCACAGCCAAATAATCCAGTGGTAACTTTTGATATATTTGATGTCCCTATGCCAGGGCTTCCAAAAAACA TTAGGACATATTTCGAGGAAGTTATGCATGACCCTGCTGAATGGGCTAAATTATGCGTAGATAAATTTGGGGCAGATATG ATTACAATGCATCACATTTCCACAGACCCGAAACTTAAAGATACCTCGCCAAGAGATGCCGCAAAATTGATGGAAGATGT ATTGCAGGCAGTTGATGTTCCATTTGTAATCGGAGGAAGTGGAGACCCGTCAAAAGACCCAAAAGTATTGGAAGCTTGTG CAGAAGTTGCAGAAGGAGAAAAATGTCTTTTAGCATCTGCTAACCTTGATTTAGATTATAAAAAAGTTGCCGATGTTGCT ATGAAATATGATCACAATGTGCTTTCTTGGACCATTATGGACCCGAATATGGCAAAAGACCTTAATAAAAAATTAATTGC TCATGGATTAGAGGGGGATAGAATTGTTATGGACCCTACAACCTGTTCATTAGGATATGGTTCTGAATTTTCAATCAATG CCATGACAAGGTTAAGAATTAATGGATTAAAAGGAGATGAATTTGTAAATATGCCAATGTCTTCTGGAACCACAAATGCT ATTGGAGCAAGAGAGGCCTGGATGGTAAATCCAGAATGGGGAGACAGACAATACAGATTACCATTATGGGAAATTACAAC AGGATTAAGTATGCTTTTAAGTGGAGTAGATATTTTTATGATGCTTCACCCGTTATCAATTGCCGTATTAAAGGAGTTTG GACAAACACTTACAACTAAACCTAATGAAGTAAAATTAACTACGGATAATTATGAATGGATTAAAGCATAA
Upstream 100 bases:
>100_bases CATATCCATTATTATATTTATACATTATACCTTTATCAATATATATTATATATGAATTTCTCACATTCTTATTTATTTTA TTCATTATCTCGGTGATTAT
Downstream 100 bases:
>100_bases AAATTATTTATTATATATTAATATATTAATATGTTATTATTATTATTATTATTATTATTATTTCTACATATTATTTCGGT GATATAATGGCTAAAATAAG
Product: acetyl-CoA decarbonylase/synthase complex subunit delta
Products: CO2; AH2
Alternate protein names: ACDS complex subunit delta; Corrinoid/iron-sulfur component small subunit [H]
Number of amino acids: Translated: 396; Mature: 396
Protein sequence:
>396_residues MDFDSLMELVKKTGRIEINDISITADELIINIPSAPPMRIPQTPAMKQTLAESGVYEDLKISIPDVDWELPINTYKGNIR EVQFGRPKSEGGRGKVIKIGGQKALYRFEEPQPNNPVVTFDIFDVPMPGLPKNIRTYFEEVMHDPAEWAKLCVDKFGADM ITMHHISTDPKLKDTSPRDAAKLMEDVLQAVDVPFVIGGSGDPSKDPKVLEACAEVAEGEKCLLASANLDLDYKKVADVA MKYDHNVLSWTIMDPNMAKDLNKKLIAHGLEGDRIVMDPTTCSLGYGSEFSINAMTRLRINGLKGDEFVNMPMSSGTTNA IGAREAWMVNPEWGDRQYRLPLWEITTGLSMLLSGVDIFMMLHPLSIAVLKEFGQTLTTKPNEVKLTTDNYEWIKA
Sequences:
>Translated_396_residues MDFDSLMELVKKTGRIEINDISITADELIINIPSAPPMRIPQTPAMKQTLAESGVYEDLKISIPDVDWELPINTYKGNIR EVQFGRPKSEGGRGKVIKIGGQKALYRFEEPQPNNPVVTFDIFDVPMPGLPKNIRTYFEEVMHDPAEWAKLCVDKFGADM ITMHHISTDPKLKDTSPRDAAKLMEDVLQAVDVPFVIGGSGDPSKDPKVLEACAEVAEGEKCLLASANLDLDYKKVADVA MKYDHNVLSWTIMDPNMAKDLNKKLIAHGLEGDRIVMDPTTCSLGYGSEFSINAMTRLRINGLKGDEFVNMPMSSGTTNA IGAREAWMVNPEWGDRQYRLPLWEITTGLSMLLSGVDIFMMLHPLSIAVLKEFGQTLTTKPNEVKLTTDNYEWIKA >Mature_396_residues MDFDSLMELVKKTGRIEINDISITADELIINIPSAPPMRIPQTPAMKQTLAESGVYEDLKISIPDVDWELPINTYKGNIR EVQFGRPKSEGGRGKVIKIGGQKALYRFEEPQPNNPVVTFDIFDVPMPGLPKNIRTYFEEVMHDPAEWAKLCVDKFGADM ITMHHISTDPKLKDTSPRDAAKLMEDVLQAVDVPFVIGGSGDPSKDPKVLEACAEVAEGEKCLLASANLDLDYKKVADVA MKYDHNVLSWTIMDPNMAKDLNKKLIAHGLEGDRIVMDPTTCSLGYGSEFSINAMTRLRINGLKGDEFVNMPMSSGTTNA IGAREAWMVNPEWGDRQYRLPLWEITTGLSMLLSGVDIFMMLHPLSIAVLKEFGQTLTTKPNEVKLTTDNYEWIKA
Specific function: Part of a complex that catalyzes the reversible cleavage of acetyl-CoA, allowing autotrophic growth from CO(2). Probably maintains the overall quaternary structure of the ACDS complex [H]
COG id: COG2069
COG function: function code C; CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CdhD family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016041 - InterPro: IPR004486 - InterPro: IPR011005 - InterPro: IPR000489 [H]
Pfam domain/function: PF03599 CdhD [H]
EC number: 1.2.99.2
Molecular weight: Translated: 44137; Mature: 44137
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 5.1 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDFDSLMELVKKTGRIEINDISITADELIINIPSAPPMRIPQTPAMKQTLAESGVYEDLK CCHHHHHHHHHHCCCEEEEEEEEEECCEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCEE ISIPDVDWELPINTYKGNIREVQFGRPKSEGGRGKVIKIGGQKALYRFEEPQPNNPVVTF EECCCCCEECCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCEEEE DIFDVPMPGLPKNIRTYFEEVMHDPAEWAKLCVDKFGADMITMHHISTDPKLKDTSPRDA EEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHH AKLMEDVLQAVDVPFVIGGSGDPSKDPKVLEACAEVAEGEKCLLASANLDLDYKKVADVA HHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHH MKYDHNVLSWTIMDPNMAKDLNKKLIAHGLEGDRIVMDPTTCSLGYGSEFSINAMTRLRI HHCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCEEEECCCEEECCCCCCEEEEEEEEEEE NGLKGDEFVNMPMSSGTTNAIGAREAWMVNPEWGDRQYRLPLWEITTGLSMLLSGVDIFM ECCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCEEECCHHHHHHHHHHHHHHHHHHH MLHPLSIAVLKEFGQTLTTKPNEVKLTTDNYEWIKA HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECC >Mature Secondary Structure MDFDSLMELVKKTGRIEINDISITADELIINIPSAPPMRIPQTPAMKQTLAESGVYEDLK CCHHHHHHHHHHCCCEEEEEEEEEECCEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCEE ISIPDVDWELPINTYKGNIREVQFGRPKSEGGRGKVIKIGGQKALYRFEEPQPNNPVVTF EECCCCCEECCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCEEEE DIFDVPMPGLPKNIRTYFEEVMHDPAEWAKLCVDKFGADMITMHHISTDPKLKDTSPRDA EEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHH AKLMEDVLQAVDVPFVIGGSGDPSKDPKVLEACAEVAEGEKCLLASANLDLDYKKVADVA HHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHH MKYDHNVLSWTIMDPNMAKDLNKKLIAHGLEGDRIVMDPTTCSLGYGSEFSINAMTRLRI HHCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCEEEECCCEEECCCCCCEEEEEEEEEEE NGLKGDEFVNMPMSSGTTNAIGAREAWMVNPEWGDRQYRLPLWEITTGLSMLLSGVDIFM ECCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCEEECCHHHHHHHHHHHHHHHHHHH MLHPLSIAVLKEFGQTLTTKPNEVKLTTDNYEWIKA HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: CO; H2O; A
Specific reaction: CO + H2O + A = CO2 + AH2
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]