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The map label for this gene is efp

Identifier: 150009186

GI number: 150009186

Start: 3065650

End: 3066216

Strand: Direct

Name: efp

Synonym: BDI_2588

Alternate gene names: 150009186

Gene position: 3065650-3066216 (Clockwise)

Preceding gene: 150009185

Following gene: 150009187

Centisome position: 63.72

GC content: 43.74

Gene sequence:

>567_bases
ATGATCAATTCACAAGACATTAAGAAAGGAACTTGTATCCGTTTGGACGGAAAACTCTATTTCTGCGTCGATTTCCTTCA
CGTAAAACCGGGTAAAGGTAATACCATCATGCGTACCACATTGAAAGATGTTGTAAAAGGCGGTCAGATCGAGCGTCGTT
TCAATATCGGTGAGAAGTTGGAAGATGTACGCGTAGAACGTCGCCCGTATCAGTTCACTTATACGGAAGGCGAGCATTAT
CATTTCATGAACCAAGAGACATTCGATGACGTGATCATCGACAAAAACTTGATCAACGGCGTTGATTTCATGAAAGAGGG
AGAAATTGTAGACGTTGTTTCTGATGCATCTACCGATACGGTTCTTTTCGCCGACATGCCTACAAAAGTTCAATTAAAAG
TTACTTATACAGAACCGGGTATTAAAGGTGACACTGCTACTAACACCTTGAAACCGGCAACCGTAGAGACTGGTGCGGAA
GTTCGCGTTCCGTTGTTCATCAACGAGGGCGAGGTTATCGAGATCAATACGACTGATGGTTCTTACGTAGGCCGTATCCG
CGAGTAA

Upstream 100 bases:

>100_bases
AATACGCAAAACTTTTTGCTACTTTAGCAGGAATGTACTACTTTTGCCCCCGAAAATCGTTAAGGATTACTCTATAACAT
TATAAATAAAGAAAATAAAT

Downstream 100 bases:

>100_bases
TCCGGGTCTTGTCAAAATATACGGTTCCCGCTTGATAAGCAGGCGGGAACTATTTTTTTAACCAAATCATAAACCTTTCC
CGACTATGAAAGAAAAGACA

Product: elongation factor P

Products: NA

Alternate protein names: EF-P

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MINSQDIKKGTCIRLDGKLYFCVDFLHVKPGKGNTIMRTTLKDVVKGGQIERRFNIGEKLEDVRVERRPYQFTYTEGEHY
HFMNQETFDDVIIDKNLINGVDFMKEGEIVDVVSDASTDTVLFADMPTKVQLKVTYTEPGIKGDTATNTLKPATVETGAE
VRVPLFINEGEVIEINTTDGSYVGRIRE

Sequences:

>Translated_188_residues
MINSQDIKKGTCIRLDGKLYFCVDFLHVKPGKGNTIMRTTLKDVVKGGQIERRFNIGEKLEDVRVERRPYQFTYTEGEHY
HFMNQETFDDVIIDKNLINGVDFMKEGEIVDVVSDASTDTVLFADMPTKVQLKVTYTEPGIKGDTATNTLKPATVETGAE
VRVPLFINEGEVIEINTTDGSYVGRIRE
>Mature_188_residues
MINSQDIKKGTCIRLDGKLYFCVDFLHVKPGKGNTIMRTTLKDVVKGGQIERRFNIGEKLEDVRVERRPYQFTYTEGEHY
HFMNQETFDDVIIDKNLINGVDFMKEGEIVDVVSDASTDTVLFADMPTKVQLKVTYTEPGIKGDTATNTLKPATVETGAE
VRVPLFINEGEVIEINTTDGSYVGRIRE

Specific function: Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing t

COG id: COG0231

COG function: function code J; Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the elongation factor P family

Homologues:

Organism=Escherichia coli, GI1790590, Length=186, Percent_Identity=36.5591397849462, Blast_Score=120, Evalue=6e-29,
Organism=Escherichia coli, GI87082061, Length=188, Percent_Identity=31.9148936170213, Blast_Score=95, Evalue=2e-21,

Paralogues:

None

Copy number: 1600 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): EFP_PARD8 (A6LF43)

Other databases:

- EMBL:   CP000140
- RefSeq:   YP_001303929.1
- ProteinModelPortal:   A6LF43
- SMR:   A6LF43
- STRING:   A6LF43
- GeneID:   5307737
- GenomeReviews:   CP000140_GR
- KEGG:   pdi:BDI_2588
- eggNOG:   COG0231
- HOGENOM:   HBG303311
- OMA:   MISSNDF
- ProtClustDB:   PRK00529
- BioCyc:   PDIS435591:BDI_2588-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00141
- InterPro:   IPR015365
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR020599
- InterPro:   IPR013185
- InterPro:   IPR001059
- InterPro:   IPR013852
- InterPro:   IPR011768
- InterPro:   IPR014722
- InterPro:   IPR008991
- Gene3D:   G3DSA:2.40.50.140
- Gene3D:   G3DSA:2.30.30.30
- PIRSF:   PIRSF005901
- SMART:   SM00841
- TIGRFAMs:   TIGR00038

Pfam domain/function: PF01132 EFP; PF08207 EFP_N; PF09285 Elong-fact-P_C; SSF50249 Nucleic_acid_OB; SSF50104 Transl_SH3_like

EC number: NA

Molecular weight: Translated: 21244; Mature: 21244

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS01275 EFP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINSQDIKKGTCIRLDGKLYFCVDFLHVKPGKGNTIMRTTLKDVVKGGQIERRFNIGEKL
CCCCCCCCCCCEEEECCEEEEEEEEEEECCCCCCEEEHHHHHHHHCCCCEEEECCCCCHH
EDVRVERRPYQFTYTEGEHYHFMNQETFDDVIIDKNLINGVDFMKEGEIVDVVSDASTDT
HHHHHCCCCEEEEEECCCEEEECCCCCCCCEEECCHHHCCCCCCCCCCEEEEECCCCCCE
VLFADMPTKVQLKVTYTEPGIKGDTATNTLKPATVETGAEVRVPLFINEGEVIEINTTDG
EEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCEECCCCEEEEEEEECCCCEEEEECCCC
SYVGRIRE
CEEEEECC
>Mature Secondary Structure
MINSQDIKKGTCIRLDGKLYFCVDFLHVKPGKGNTIMRTTLKDVVKGGQIERRFNIGEKL
CCCCCCCCCCCEEEECCEEEEEEEEEEECCCCCCEEEHHHHHHHHCCCCEEEECCCCCHH
EDVRVERRPYQFTYTEGEHYHFMNQETFDDVIIDKNLINGVDFMKEGEIVDVVSDASTDT
HHHHHCCCCEEEEEECCCEEEECCCCCCCCEEECCHHHCCCCCCCCCCEEEEECCCCCCE
VLFADMPTKVQLKVTYTEPGIKGDTATNTLKPATVETGAEVRVPLFINEGEVIEINTTDG
EEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCEECCCCEEEEEEEECCCCEEEEECCCC
SYVGRIRE
CEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA