Click here to switch to the map view.

The map label for this gene is radC [C]

Identifier: 150009187

GI number: 150009187

Start: 3066302

End: 3067009

Strand: Direct

Name: radC [C]

Synonym: BDI_2589

Alternate gene names: 150009187

Gene position: 3066302-3067009 (Clockwise)

Preceding gene: 150009186

Following gene: 150009188

Centisome position: 63.73

GC content: 48.45

Gene sequence:

>708_bases
ATGAAAGAAAAGACAGGAAAACTTTCCATCAAGGAATGGGCCGAAGAAGACAGGCCCCGTGAGAAAATGCTTCAAAAAGG
CGCTTCCGTATTAAGCGATGCCGAATTGATCGCCATACTGATCGGATCCGGCAACAATGAGGAGACGGCCGTACAACTCT
CTCAACGGATACTTCACTCCGTAAACAACAATCTGAATACATTGGGTAAACGTTCCATCAAAGAATTAACTTCCGGCTTT
AAAGGTATCGGAGAGGCGAAGGCGGTCACGATCTGCGCCGCTATGGAACTAGGGAAACGGCGGGAAACCTCAGAGGCGTC
TCCTCAAGATGCTATCCGAAGCAGCAAAGACTCCTATCTCCTATTCCGTACCCAACTATGCGATTTACCTTATGAGGAAC
TCTGGATCGCTCTAACCAATCCATTAAATAAGGTGATACAAAAGGTAAAAATCAGTCAGGGCGGAGTAAACCAGACTTCC
GTGGATATCCGTTTGGTATTAAAAGCGGCGATCAACGCCTTGGCCTCCGGTATAATCCTATGCCATAATCATCCATCCGG
TAGCCTCCGCCCCAGTACGCACGACGATGCCTTGACCGAGCGTATCCAAAAGGCGGCGAAGCTGATGGATATTAGGATAC
TGGACCATATCATCCTGTCCGATAGCGGCTATTATAGCTATGCAGACGAAGGAAGGCTGATCCGGTGA

Upstream 100 bases:

>100_bases
CGTATCCGCGAGTAATCCGGGTCTTGTCAAAATATACGGTTCCCGCTTGATAAGCAGGCGGGAACTATTTTTTTAACCAA
ATCATAAACCTTTCCCGACT

Downstream 100 bases:

>100_bases
AACAAATTCTCTTTTCCCCCGGTTTAGTATATAGAAGTATTAATGTATATTCGCGTATAAAACAAAAGAAGATGAACAAC
GAATTTCTCCAAACAGAAGA

Product: putative DNA repair protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MKEKTGKLSIKEWAEEDRPREKMLQKGASVLSDAELIAILIGSGNNEETAVQLSQRILHSVNNNLNTLGKRSIKELTSGF
KGIGEAKAVTICAAMELGKRRETSEASPQDAIRSSKDSYLLFRTQLCDLPYEELWIALTNPLNKVIQKVKISQGGVNQTS
VDIRLVLKAAINALASGIILCHNHPSGSLRPSTHDDALTERIQKAAKLMDIRILDHIILSDSGYYSYADEGRLIR

Sequences:

>Translated_235_residues
MKEKTGKLSIKEWAEEDRPREKMLQKGASVLSDAELIAILIGSGNNEETAVQLSQRILHSVNNNLNTLGKRSIKELTSGF
KGIGEAKAVTICAAMELGKRRETSEASPQDAIRSSKDSYLLFRTQLCDLPYEELWIALTNPLNKVIQKVKISQGGVNQTS
VDIRLVLKAAINALASGIILCHNHPSGSLRPSTHDDALTERIQKAAKLMDIRILDHIILSDSGYYSYADEGRLIR
>Mature_235_residues
MKEKTGKLSIKEWAEEDRPREKMLQKGASVLSDAELIAILIGSGNNEETAVQLSQRILHSVNNNLNTLGKRSIKELTSGF
KGIGEAKAVTICAAMELGKRRETSEASPQDAIRSSKDSYLLFRTQLCDLPYEELWIALTNPLNKVIQKVKISQGGVNQTS
VDIRLVLKAAINALASGIILCHNHPSGSLRPSTHDDALTERIQKAAKLMDIRILDHIILSDSGYYSYADEGRLIR

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=32.8638497652582, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI2367100, Length=126, Percent_Identity=34.9206349206349, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1788312, Length=126, Percent_Identity=34.1269841269841, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1788997, Length=123, Percent_Identity=34.1463414634146, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25937; Mature: 25937

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKTGKLSIKEWAEEDRPREKMLQKGASVLSDAELIAILIGSGNNEETAVQLSQRILHS
CCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHH
VNNNLNTLGKRSIKELTSGFKGIGEAKAVTICAAMELGKRRETSEASPQDAIRSSKDSYL
HCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCEE
LFRTQLCDLPYEELWIALTNPLNKVIQKVKISQGGVNQTSVDIRLVLKAAINALASGIIL
EEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCEEE
CHNHPSGSLRPSTHDDALTERIQKAAKLMDIRILDHIILSDSGYYSYADEGRLIR
EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC
>Mature Secondary Structure
MKEKTGKLSIKEWAEEDRPREKMLQKGASVLSDAELIAILIGSGNNEETAVQLSQRILHS
CCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHH
VNNNLNTLGKRSIKELTSGFKGIGEAKAVTICAAMELGKRRETSEASPQDAIRSSKDSYL
HCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCEE
LFRTQLCDLPYEELWIALTNPLNKVIQKVKISQGGVNQTSVDIRLVLKAAINALASGIIL
EEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCEEE
CHNHPSGSLRPSTHDDALTERIQKAAKLMDIRILDHIILSDSGYYSYADEGRLIR
EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA