| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
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The map label for this gene is mutS2 [H]
Identifier: 150007883
GI number: 150007883
Start: 1441851
End: 1444319
Strand: Direct
Name: mutS2 [H]
Synonym: BDI_1243
Alternate gene names: 150007883
Gene position: 1441851-1444319 (Clockwise)
Preceding gene: 150007882
Following gene: 150007884
Centisome position: 29.97
GC content: 49.66
Gene sequence:
>2469_bases GTGATATATCCACAAAATTTTGAACAAAAGACGGGCTTTGATAAGATCCGTCACTTAATCACAGAAAAATGTTTAAGCCC GCTCGGGGAAGAGCGGGTAGCGGAGATGGGATTCTCCGCCGATTTCGAGGTCGTATCCAAGCGATTGGAACAAACCGATG AGTTTATCCGTATCCTACACGGAGACACGGAATTCCCTGCCAGTTATTTCTTCGACGTGCGCTATTCCTTGAAACGGATT CGGCCGGAAGGTACTTGGCTGGATGAACGGGAGTTGTTCGACCTCAAACGTTCCTTGCAAACGATCAATGACATCGTACG CTTCTTCAAGCCTATGGACGATGAGGAAATCAAGTATCCGGCCTTGACTGAATTGGCGGGAGATATCTTTGTCTTCCCCC AATTGATTGGAAAGATCGATAGTATCCTCGATAAATTCGGCAAGGTCAAGGACAGTGCTTCCTCCACCCTATCGCAAATC CGCAGGGAAATGACGATCACGATGAGCGGTATTTCCCGCAGCCTGCAATCCATCCTCCGTGCGGCACAATCGGACGGGGT TGTCGATAAGGACGTGACACCGACCATGCGCGACGGTCGTTTGATGATCCCGGTAGCCCCGGCCTTCAAACGAAAGATAA AAGGTATCGTACATGATGAGTCCGCCAGTGGCAAGACGGTCTTTATAGAGCCGGAGGTGGTCGTGGAAGCGAATAACCGC ATCCGGGAACTGGAAGGGGAAGAACGCCGGGAAATCATTAAGATACTGACGGAATTCACGAACGTGATCCGTCCTTTAGC TCCGGATATCCTACAATCTTACGAGTTTCTTGCCGACATTGACTTCATTCGTGCGAAAGCGTTATTCGCGGAGCAAGTCA AGGCGATCAAGCCGATCGTGGAGGATAAGCGACAAATGGATTGGGTACGTGCCGTGCATCCGCTCTTATTCCTGTCTTTA CAGAAACAGGGCAAGCAGGTAGTTCCCCTCGATATCGAGCTGACCGAGGGAAAACGGATCTTGATCATATCCGGTCCGAA CGCCGGTGGTAAATCCGTTTGCCTGAAAACGGTCGGATTACTTCAATACATGTTGCAATGTGGTTTATTGATTCCTTTGC ATGAGCGATCAAGAACCGGGATCTTCGAGCATATATTCATCGATATAGGCGATGAGCAAAGCATCGAGAACGATTTGAGT ACCTACAGTTCCCACCTTACCAACATGAAGTATTTCGTGAAGAATTGTAACGAGCGGACCATTATCCTAATCGATGAGTT CGGTAGCGGTACGGAACCCCAGATTGGCGGCGCTATCGCCGAGGCTTTATTGGATCGCTTCAACCGGAATCATAGCTTTG GGGTAATCACGACCCACTACCAGAATTTGAAGCATTTCGCCGAGGATACGGAAGGTATCGTAAACGGTGCCATGTTGTAC GACCGCCATTTGATGCAGCCCTTGTTCAAGCTTTCTATCGGAAATCCGGGTAGCTCTTTTGCCGTAGAGATCGCACGCAA GATCGGTCTGCCCGAGGACGTGATAGCCGACGCTTCCGCGAACGTCGGAGCGGATTATATCAATATGGACAAATACCTGC AAGATATCGTACGCGATAAACGGTACTGGGAAAGCAAACGGCAGAATATCCGTCAGCAGGAGAAAAAACTGGAAGATGTC ACTTCCCGTTATGAACAAGACTTGGAAGCCGTAAACAAGCAACGGAAAGAGATCATCCGGGAGGCAAAGGCCGAGGCCCA ACGTATTCTAGCGGAGGCTAACGCCAAGATCGAGAATACCGTCCGTGAGATCAAGGAGGCCCAAGCGGAAAAAGAACAGA CCAAACTGGCCCGCAAAGCCTTGGAAGAGTTCAAGAACTCCGTCATGGCGACCGAAGAAGAAGACGATAAGATCGCACGC AAGATGGCGAAGCTCAAGGAACGGAACGAACGGAAGAAACAGAAACAAAAAGTGACGGCCCAGCCGATATTTAATAAAGA GGTGATAGAGGTCGGCGACAATGTACGCCTTAAAGGGCAGGTTTCCGCCGGAACCGTTATGGAACTACAAGGAAAGCAGG CCGTAGTAGCATTCGGGATGATCAAAAGCACGGTTAAGCTGGAGCAGTTGGAAAAGGTAAGCAAAGGCCAGATCAAACGG GAAATCCAGAAAAGCACGTTCGTCAGCTCCCAGACCACTGACAATATGCATGAGAAGAAGATAAACTTTAAGCAAGAAAT CGATGTGAGAGGAATGAGGGGCGATGAGGCATTGCAAAGCGTGACTTATTTTATCGACGACGCCATTCAAGTCGGGGCAG GCAAGGTTCGCATCTTACATGGAACCGGTACGGGTATCTTACGTCAGCTAATCCGGGATTATCTGCGCACGGTTCCCGGT GTCCGTCGCTTTCAAGACGAGCATGTGCAGTTCGGAGGCGCCGGTATCACCGTTGTTGAGTTTGATTAA
Upstream 100 bases:
>100_bases ATTTAATATAAAGCGTGGCAAGACAAAATTAGAAGTAATTATCCGTCCTACCATTCGCTCTGAAGTGACGGTAGAGATCA AATAAAGATTTTACAAACAC
Downstream 100 bases:
>100_bases AAAGAGATCCTTATTATGAGACGGAATGAATATACACACAGGAGAAGACATATATCCAACCGGCATTTATCGGACAAGTA TTATTACGCCGGCGAACATG
Product: DNA mismatch repair protein MutS
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 822; Mature: 822
Protein sequence:
>822_residues MIYPQNFEQKTGFDKIRHLITEKCLSPLGEERVAEMGFSADFEVVSKRLEQTDEFIRILHGDTEFPASYFFDVRYSLKRI RPEGTWLDERELFDLKRSLQTINDIVRFFKPMDDEEIKYPALTELAGDIFVFPQLIGKIDSILDKFGKVKDSASSTLSQI RREMTITMSGISRSLQSILRAAQSDGVVDKDVTPTMRDGRLMIPVAPAFKRKIKGIVHDESASGKTVFIEPEVVVEANNR IRELEGEERREIIKILTEFTNVIRPLAPDILQSYEFLADIDFIRAKALFAEQVKAIKPIVEDKRQMDWVRAVHPLLFLSL QKQGKQVVPLDIELTEGKRILIISGPNAGGKSVCLKTVGLLQYMLQCGLLIPLHERSRTGIFEHIFIDIGDEQSIENDLS TYSSHLTNMKYFVKNCNERTIILIDEFGSGTEPQIGGAIAEALLDRFNRNHSFGVITTHYQNLKHFAEDTEGIVNGAMLY DRHLMQPLFKLSIGNPGSSFAVEIARKIGLPEDVIADASANVGADYINMDKYLQDIVRDKRYWESKRQNIRQQEKKLEDV TSRYEQDLEAVNKQRKEIIREAKAEAQRILAEANAKIENTVREIKEAQAEKEQTKLARKALEEFKNSVMATEEEDDKIAR KMAKLKERNERKKQKQKVTAQPIFNKEVIEVGDNVRLKGQVSAGTVMELQGKQAVVAFGMIKSTVKLEQLEKVSKGQIKR EIQKSTFVSSQTTDNMHEKKINFKQEIDVRGMRGDEALQSVTYFIDDAIQVGAGKVRILHGTGTGILRQLIRDYLRTVPG VRRFQDEHVQFGGAGITVVEFD
Sequences:
>Translated_822_residues MIYPQNFEQKTGFDKIRHLITEKCLSPLGEERVAEMGFSADFEVVSKRLEQTDEFIRILHGDTEFPASYFFDVRYSLKRI RPEGTWLDERELFDLKRSLQTINDIVRFFKPMDDEEIKYPALTELAGDIFVFPQLIGKIDSILDKFGKVKDSASSTLSQI RREMTITMSGISRSLQSILRAAQSDGVVDKDVTPTMRDGRLMIPVAPAFKRKIKGIVHDESASGKTVFIEPEVVVEANNR IRELEGEERREIIKILTEFTNVIRPLAPDILQSYEFLADIDFIRAKALFAEQVKAIKPIVEDKRQMDWVRAVHPLLFLSL QKQGKQVVPLDIELTEGKRILIISGPNAGGKSVCLKTVGLLQYMLQCGLLIPLHERSRTGIFEHIFIDIGDEQSIENDLS TYSSHLTNMKYFVKNCNERTIILIDEFGSGTEPQIGGAIAEALLDRFNRNHSFGVITTHYQNLKHFAEDTEGIVNGAMLY DRHLMQPLFKLSIGNPGSSFAVEIARKIGLPEDVIADASANVGADYINMDKYLQDIVRDKRYWESKRQNIRQQEKKLEDV TSRYEQDLEAVNKQRKEIIREAKAEAQRILAEANAKIENTVREIKEAQAEKEQTKLARKALEEFKNSVMATEEEDDKIAR KMAKLKERNERKKQKQKVTAQPIFNKEVIEVGDNVRLKGQVSAGTVMELQGKQAVVAFGMIKSTVKLEQLEKVSKGQIKR EIQKSTFVSSQTTDNMHEKKINFKQEIDVRGMRGDEALQSVTYFIDDAIQVGAGKVRILHGTGTGILRQLIRDYLRTVPG VRRFQDEHVQFGGAGITVVEFD >Mature_822_residues MIYPQNFEQKTGFDKIRHLITEKCLSPLGEERVAEMGFSADFEVVSKRLEQTDEFIRILHGDTEFPASYFFDVRYSLKRI RPEGTWLDERELFDLKRSLQTINDIVRFFKPMDDEEIKYPALTELAGDIFVFPQLIGKIDSILDKFGKVKDSASSTLSQI RREMTITMSGISRSLQSILRAAQSDGVVDKDVTPTMRDGRLMIPVAPAFKRKIKGIVHDESASGKTVFIEPEVVVEANNR IRELEGEERREIIKILTEFTNVIRPLAPDILQSYEFLADIDFIRAKALFAEQVKAIKPIVEDKRQMDWVRAVHPLLFLSL QKQGKQVVPLDIELTEGKRILIISGPNAGGKSVCLKTVGLLQYMLQCGLLIPLHERSRTGIFEHIFIDIGDEQSIENDLS TYSSHLTNMKYFVKNCNERTIILIDEFGSGTEPQIGGAIAEALLDRFNRNHSFGVITTHYQNLKHFAEDTEGIVNGAMLY DRHLMQPLFKLSIGNPGSSFAVEIARKIGLPEDVIADASANVGADYINMDKYLQDIVRDKRYWESKRQNIRQQEKKLEDV TSRYEQDLEAVNKQRKEIIREAKAEAQRILAEANAKIENTVREIKEAQAEKEQTKLARKALEEFKNSVMATEEEDDKIAR KMAKLKERNERKKQKQKVTAQPIFNKEVIEVGDNVRLKGQVSAGTVMELQGKQAVVAFGMIKSTVKLEQLEKVSKGQIKR EIQKSTFVSSQTTDNMHEKKINFKQEIDVRGMRGDEALQSVTYFIDDAIQVGAGKVRILHGTGTGILRQLIRDYLRTVPG VRRFQDEHVQFGGAGITVVEFD
Specific function: This Protein Is Involved In The Repair Of Mismatches In DNA. It Is Possible That It Carries Out The Mismatch Recognition Step. This Protein Has A Weak Atpase Activity. [C]
COG id: COG1193
COG function: function code L; Mismatch repair ATPase (MutS family)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Smr domain [H]
Homologues:
Organism=Homo sapiens, GI284813531, Length=269, Percent_Identity=28.2527881040892, Blast_Score=107, Evalue=6e-23, Organism=Homo sapiens, GI36949366, Length=132, Percent_Identity=37.1212121212121, Blast_Score=89, Evalue=1e-17, Organism=Homo sapiens, GI26638666, Length=214, Percent_Identity=29.4392523364486, Blast_Score=76, Evalue=2e-13, Organism=Homo sapiens, GI4505253, Length=214, Percent_Identity=29.4392523364486, Blast_Score=76, Evalue=2e-13, Organism=Homo sapiens, GI4504191, Length=210, Percent_Identity=27.6190476190476, Blast_Score=72, Evalue=2e-12, Organism=Homo sapiens, GI4557761, Length=457, Percent_Identity=21.4442013129103, Blast_Score=72, Evalue=2e-12, Organism=Homo sapiens, GI26638664, Length=215, Percent_Identity=29.3023255813954, Blast_Score=71, Evalue=4e-12, Organism=Homo sapiens, GI262231786, Length=137, Percent_Identity=35.7664233576642, Blast_Score=70, Evalue=9e-12, Organism=Escherichia coli, GI1789089, Length=268, Percent_Identity=25.7462686567164, Blast_Score=93, Evalue=8e-20, Organism=Caenorhabditis elegans, GI17534743, Length=297, Percent_Identity=23.9057239057239, Blast_Score=90, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17508445, Length=277, Percent_Identity=23.826714801444, Blast_Score=86, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17539736, Length=290, Percent_Identity=24.4827586206897, Blast_Score=84, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17508447, Length=213, Percent_Identity=25.8215962441315, Blast_Score=71, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6319935, Length=290, Percent_Identity=30.6896551724138, Blast_Score=99, Evalue=2e-21, Organism=Saccharomyces cerevisiae, GI6324482, Length=290, Percent_Identity=25.5172413793103, Blast_Score=91, Evalue=5e-19, Organism=Saccharomyces cerevisiae, GI6321912, Length=320, Percent_Identity=21.25, Blast_Score=80, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6320302, Length=223, Percent_Identity=28.2511210762332, Blast_Score=75, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6320047, Length=207, Percent_Identity=28.0193236714976, Blast_Score=75, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6321109, Length=217, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24664545, Length=263, Percent_Identity=26.2357414448669, Blast_Score=86, Evalue=9e-17, Organism=Drosophila melanogaster, GI24584320, Length=186, Percent_Identity=25.8064516129032, Blast_Score=79, Evalue=9e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005747 - InterPro: IPR000432 - InterPro: IPR007696 - InterPro: IPR002625 [H]
Pfam domain/function: PF05192 MutS_III; PF00488 MutS_V; PF01713 Smr [H]
EC number: NA
Molecular weight: Translated: 93565; Mature: 93565
Theoretical pI: Translated: 7.05; Mature: 7.05
Prosite motif: PS50828 SMR ; PS00486 DNA_MISMATCH_REPAIR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIYPQNFEQKTGFDKIRHLITEKCLSPLGEERVAEMGFSADFEVVSKRLEQTDEFIRILH CCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC GDTEFPASYFFDVRYSLKRIRPEGTWLDERELFDLKRSLQTINDIVRFFKPMDDEEIKYP CCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC ALTELAGDIFVFPQLIGKIDSILDKFGKVKDSASSTLSQIRREMTITMSGISRSLQSILR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAQSDGVVDKDVTPTMRDGRLMIPVAPAFKRKIKGIVHDESASGKTVFIEPEVVVEANNR HHHCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCEECCCCCCCEEEECCCEEEECCCH IRELEGEERREIIKILTEFTNVIRPLAPDILQSYEFLADIDFIRAKALFAEQVKAIKPIV HHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EDKRQMDWVRAVHPLLFLSLQKQGKQVVPLDIELTEGKRILIISGPNAGGKSVCLKTVGL HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHH LQYMLQCGLLIPLHERSRTGIFEHIFIDIGDEQSIENDLSTYSSHLTNMKYFVKNCNERT HHHHHHCCCEEEECCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE IILIDEFGSGTEPQIGGAIAEALLDRFNRNHSFGVITTHYQNLKHFAEDTEGIVNGAMLY EEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH DRHLMQPLFKLSIGNPGSSFAVEIARKIGLPEDVIADASANVGADYINMDKYLQDIVRDK HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHH RYWESKRQNIRQQEKKLEDVTSRYEQDLEAVNKQRKEIIREAKAEAQRILAEANAKIENT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH VREIKEAQAEKEQTKLARKALEEFKNSVMATEEEDDKIARKMAKLKERNERKKQKQKVTA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC QPIFNKEVIEVGDNVRLKGQVSAGTVMELQGKQAVVAFGMIKSTVKLEQLEKVSKGQIKR CCCCCHHHHHCCCCEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH EIQKSTFVSSQTTDNMHEKKINFKQEIDVRGMRGDEALQSVTYFIDDAIQVGAGKVRILH HHHHHHHCCCCCCCCHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE GTGTGILRQLIRDYLRTVPGVRRFQDEHVQFGGAGITVVEFD CCCHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCEEEEEEEC >Mature Secondary Structure MIYPQNFEQKTGFDKIRHLITEKCLSPLGEERVAEMGFSADFEVVSKRLEQTDEFIRILH CCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC GDTEFPASYFFDVRYSLKRIRPEGTWLDERELFDLKRSLQTINDIVRFFKPMDDEEIKYP CCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC ALTELAGDIFVFPQLIGKIDSILDKFGKVKDSASSTLSQIRREMTITMSGISRSLQSILR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAQSDGVVDKDVTPTMRDGRLMIPVAPAFKRKIKGIVHDESASGKTVFIEPEVVVEANNR HHHCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCEECCCCCCCEEEECCCEEEECCCH IRELEGEERREIIKILTEFTNVIRPLAPDILQSYEFLADIDFIRAKALFAEQVKAIKPIV HHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EDKRQMDWVRAVHPLLFLSLQKQGKQVVPLDIELTEGKRILIISGPNAGGKSVCLKTVGL HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHH LQYMLQCGLLIPLHERSRTGIFEHIFIDIGDEQSIENDLSTYSSHLTNMKYFVKNCNERT HHHHHHCCCEEEECCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE IILIDEFGSGTEPQIGGAIAEALLDRFNRNHSFGVITTHYQNLKHFAEDTEGIVNGAMLY EEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH DRHLMQPLFKLSIGNPGSSFAVEIARKIGLPEDVIADASANVGADYINMDKYLQDIVRDK HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHH RYWESKRQNIRQQEKKLEDVTSRYEQDLEAVNKQRKEIIREAKAEAQRILAEANAKIENT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH VREIKEAQAEKEQTKLARKALEEFKNSVMATEEEDDKIARKMAKLKERNERKKQKQKVTA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC QPIFNKEVIEVGDNVRLKGQVSAGTVMELQGKQAVVAFGMIKSTVKLEQLEKVSKGQIKR CCCCCHHHHHCCCCEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH EIQKSTFVSSQTTDNMHEKKINFKQEIDVRGMRGDEALQSVTYFIDDAIQVGAGKVRILH HHHHHHHCCCCCCCCHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE GTGTGILRQLIRDYLRTVPGVRRFQDEHVQFGGAGITVVEFD CCCHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA