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The map label for this gene is sodB [H]

Identifier: 150007845

GI number: 150007845

Start: 1398542

End: 1399117

Strand: Direct

Name: sodB [H]

Synonym: BDI_1203

Alternate gene names: 150007845

Gene position: 1398542-1399117 (Clockwise)

Preceding gene: 150007838

Following gene: 150007848

Centisome position: 29.07

GC content: 45.83

Gene sequence:

>576_bases
ATGAAATTCGAGTTAATCCAGTTACCGTACGCAAACGACGGTTTAGAACCAGTTATCAGCAAACAAACAATTGATTTCCA
TTACGGAAAACATTTATTGAACTATGTAAATACCCTTAATAAGCTGATTGAGGGCACGAAATTCGAGAACGCTCCGCTGG
AGCAGATCGTTCGTGAGTCTGACGGAGCCATTTTCAACAATGCCGGCCAAGTATTGAATCACAATCTATATTTTACCCAA
TTCTCCCCGAACGGAGGTGGCGAACCTACGGGTAAGCTAGCCGAGGCTATCAAGTCTACGTGGGGATCGTTCGAGAACTT
CCAGAAAGAGTTCGTGGCCGCCGGTACAGGCTTGTTCGGCTCAGGATGGGTATGGTTGGCTAAAGATAAAGACGGCAAAC
TTTCAATTACCAAAGAACCCAACGGTAGTAACCCGGTCGTTAAGGGATTGACTCCGATCATGGGATTCGATGTATGGGAG
CATTCTTACTATCTGGATTACCAGAACCGCCGTGCGGATCATTTGAACGCATTGTGGAGGATTATCGACTGGGAAACCGT
TGGTAAGAGATATTGA

Upstream 100 bases:

>100_bases
GTAAATCAACATAAAAAACTAGAAGACAATGCTTACATTATGTTTAAGTTTATTATTAATGATCACAAATAGTCAAATAA
CAGATAAAAAAGAAGAAGTT

Downstream 100 bases:

>100_bases
TTTAATTTGATGTAAGTTACGTGTAGAGAAGAGCCGCCCGAGAGTTTTCCCGGACGGTTTTTTTCGTTCCCTTTTGAAAA
AAAATGCCTCCAGCTATTGC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MKFELIQLPYANDGLEPVISKQTIDFHYGKHLLNYVNTLNKLIEGTKFENAPLEQIVRESDGAIFNNAGQVLNHNLYFTQ
FSPNGGGEPTGKLAEAIKSTWGSFENFQKEFVAAGTGLFGSGWVWLAKDKDGKLSITKEPNGSNPVVKGLTPIMGFDVWE
HSYYLDYQNRRADHLNALWRIIDWETVGKRY

Sequences:

>Translated_191_residues
MKFELIQLPYANDGLEPVISKQTIDFHYGKHLLNYVNTLNKLIEGTKFENAPLEQIVRESDGAIFNNAGQVLNHNLYFTQ
FSPNGGGEPTGKLAEAIKSTWGSFENFQKEFVAAGTGLFGSGWVWLAKDKDGKLSITKEPNGSNPVVKGLTPIMGFDVWE
HSYYLDYQNRRADHLNALWRIIDWETVGKRY
>Mature_191_residues
MKFELIQLPYANDGLEPVISKQTIDFHYGKHLLNYVNTLNKLIEGTKFENAPLEQIVRESDGAIFNNAGQVLNHNLYFTQ
FSPNGGGEPTGKLAEAIKSTWGSFENFQKEFVAAGTGLFGSGWVWLAKDKDGKLSITKEPNGSNPVVKGLTPIMGFDVWE
HSYYLDYQNRRADHLNALWRIIDWETVGKRY

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=196, Percent_Identity=43.8775510204082, Blast_Score=157, Evalue=6e-39,
Organism=Homo sapiens, GI67782305, Length=196, Percent_Identity=43.8775510204082, Blast_Score=157, Evalue=6e-39,
Organism=Homo sapiens, GI67782309, Length=193, Percent_Identity=36.7875647668394, Blast_Score=117, Evalue=5e-27,
Organism=Escherichia coli, GI1787946, Length=189, Percent_Identity=51.8518518518518, Blast_Score=219, Evalue=1e-58,
Organism=Escherichia coli, GI1790342, Length=205, Percent_Identity=38.0487804878049, Blast_Score=143, Evalue=8e-36,
Organism=Caenorhabditis elegans, GI17506561, Length=195, Percent_Identity=39.4871794871795, Blast_Score=142, Evalue=1e-34,
Organism=Caenorhabditis elegans, GI17569479, Length=192, Percent_Identity=34.8958333333333, Blast_Score=129, Evalue=9e-31,
Organism=Saccharomyces cerevisiae, GI6321796, Length=206, Percent_Identity=33.495145631068, Blast_Score=108, Evalue=7e-25,
Organism=Drosophila melanogaster, GI17136812, Length=195, Percent_Identity=35.8974358974359, Blast_Score=130, Evalue=5e-31,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21617; Mature: 21617

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFELIQLPYANDGLEPVISKQTIDFHYGKHLLNYVNTLNKLIEGTKFENAPLEQIVRES
CCEEEEECCCCCCCCCCHHCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHC
DGAIFNNAGQVLNHNLYFTQFSPNGGGEPTGKLAEAIKSTWGSFENFQKEFVAAGTGLFG
CCCEECCCCHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
SGWVWLAKDKDGKLSITKEPNGSNPVVKGLTPIMGFDVWEHSYYLDYQNRRADHLNALWR
CCEEEEEECCCCCEEEEECCCCCCCHHHCCHHHHCCHHHCCEEEECCCCCCHHHHHHHHH
IIDWETVGKRY
HHHHHHCCCCC
>Mature Secondary Structure
MKFELIQLPYANDGLEPVISKQTIDFHYGKHLLNYVNTLNKLIEGTKFENAPLEQIVRES
CCEEEEECCCCCCCCCCHHCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHC
DGAIFNNAGQVLNHNLYFTQFSPNGGGEPTGKLAEAIKSTWGSFENFQKEFVAAGTGLFG
CCCEECCCCHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
SGWVWLAKDKDGKLSITKEPNGSNPVVKGLTPIMGFDVWEHSYYLDYQNRRADHLNALWR
CCEEEEEECCCCCEEEEECCCCCCCHHHCCHHHHCCHHHCCEEEECCCCCCHHHHHHHHH
IIDWETVGKRY
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA