| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
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The map label for this gene is cbg-1 [H]
Identifier: 150007848
GI number: 150007848
Start: 1401506
End: 1404112
Strand: Direct
Name: cbg-1 [H]
Synonym: BDI_1208
Alternate gene names: 150007848
Gene position: 1401506-1404112 (Clockwise)
Preceding gene: 150007845
Following gene: 150007851
Centisome position: 29.13
GC content: 50.79
Gene sequence:
>2607_bases ATGAAAATGAAACAACTGACAGTAGCGATGATCACCCTCCTACTCACCGCCTCTTGTAGTGAAAAACAACAAGATTACCC TTTCCGGAATCCGGATCTTCCCTTGGAAGAACGTATCGACGACTTACTATCCCGACTGACACCGGAGGAGAAAATCGGCC AAATGATGAACGTAACCCCCGCCATCGAGCGTTTGGGAATCCCGACTTACGACTGGTGGAACGAAGCTCTTCACGGCGTG GCTCGTGCCGGACGTGCGACCGTATTCCCACAAGCGATCGCCATGGCGGCTACCTTCGACGATAACGCCGTTCACGAGAC CTTCACGATGGTCAGCGACGAGGCCCGTGCCAAATACCACCAATACCAGAAAGACAAGGAGTACGACCGTTACAAAGGCC TTACTTTCTGGACCCCAAATATCAATATCTTCCGTGACCCTCGCTGGGGACGGGGTATGGAAACCTATGGCGAGGACCCT TACCTGACCGAGAAGATGGGCGTAGCCGTAACCCGCGGATTGCAAGGCGATGATCCTAATTATTACAAGACGCACGCTTG CGCGAAGCATTACGCCGTACACAGCGGTCCGGAATGGAACCGCCACGAATTCAACGCTGAAGCTACCCCTCGCGACTTGT ACGAGACCTACCTTCCGGCTTTCGAGGCATTAGTTAAGGAAGGCGATGTACAAGAGGTAATGTGCGCCTATAACCGTTTT GAGGGCAAACCTTGCTGTAGCAGCGACAAATTATTGATCGATATCTTGCGTAATAGCTGGGGATACGACAATATCATCCT CTCCGACTGCGGTGCTATCGATGATTTCTGGAGAAAAGACAAAAATACGCCTCGCCATGAGACGCACCCGGACGCTGAGA GCGCATCCGCCGACGCCGTATTGAACGGTACCGACCTAGAATGTGGCGGTAGCTACCGTGCGCTAAACAAAGCCTTGGCC GACGGTAAGATCTCGGAGAAAGATCTGGACGTATCCTTACGCCGCCTGCTGAAAGGTCGCTTCGAGCTAGGTATGTTCGA TCCGGACGAGCGGGTTCCTTATTCTAAGATACCTTACAGCGTAGTCGAGAGCCCGGAGCATATCGCCAAGGCACTGGATA TGGCACGTAAAAGTATCGTTTTGTTGAAGAACAAGAATAATATGCTTCCTCTGGACAAGAATATCAAGAAGATCGCCGTA GTCGGACCGAACGCAGCGGACTCGACCATGCTATGGGCCAACTACAACGGCTTCCCGACCAAGACCGTCACGATCGTGGA AGGTATCCGCAATAAAGTCCCGAACGCAGAGGTTATCTACGAGCTGGGTTGCAACCATACCGCCGATTTTGTCGTGACAG ACCTAGGTAGCCACGTATCTTCCACGGCGGGACAAGGCTTCGCCTCCGAATTCTTCAACAATACCGAGTTCGAGGGTACC CCCGCCTACAAGGGATTAGCGAAAGAGCTTCATTATACCACCGGAGGTAACACCCAATTCGCCCCGAACGTAAACTTGAC AAACTTCACGGCTCGCTTTACGGGCGAGTTCGAGTCTCCGATAGATGGTCCGGTCGAGTTCAAACTATCCGGAAACGACG CATTCCGCCTGTATATCGATACGGCTAAAGTCGCCGAAGTATGGGAAAACGAATATGGAGCAGAAAAACTCTATACGCTA AACGCTAAGAAAGGTGAGAAATATCCCATAAAGATCGAATATATGCAACGCACGGGTAGCGCTGACCTGAACTTTACGGT AGGCGTACGCACACCCGTAGATTTCCAAGCTACGGCCAGCAAGGTTAAAGACGCTGATGTCATCGTATTCGTAGGTGGTA TCTCTCCACGTCTGGAAGGTGAGGAAATGCCGGTAGACGCTGAAGGTTTCCGAAAAGGCGACCGCACGAATATCGAGATC CCGGCCGTACAAAAGGAAATGGTCAAAGCCTTGGTAGCCACCGGAAAGCCTGTGGTATACGTGGTATGTACGGGTAGCGC ATTGGCGTTGAATTGGGAGAACGATCATGTAAACGCTATCTTGAACGCTTGGTATGGCGGACAAGAAGGTGGAACAGCCG TGGCCGACGTTTTATTCGGAGACTATAACCCGGCCGGACGCTTGCCAATCACGTTCTATAAATCCGTAGACCAGCTTCCG GACTTCCAAGATTACAGCATGAAAGGCCGTACCTATCGTTACATGACGCAGACTCCGCTTTATCCGTTCGGTTATGGCTT GAGCTATACAACATTCGATTATAAGAACGCTAAGTTGTCAAAGGATAAGATCGCTTCCAACGAATCGGTTACCCTCTCCT TCGATATCGCCAATACAGGCAAGATGGATGGTGACGAGGTCGCTCAGATCTACATCAAGAACCCGAACGATCCCGCCGGA CCGCTAAAAGCGATGAAAGCATTCAAACGTGTGAACGTGAAGGCTGGCAGCGAACAACCGGTTAGCATCCAATTGGAACC GAAAGCTTTCCAATCCTTCAATGACAATACACAGACCATGGAGGTTCGCCCGGGTAAATACCAAATCCTATATGGAGGTT CCTCGGACGATAAGACACTGAAAAAGATTGATTTAGTAATTGAATAA
Upstream 100 bases:
>100_bases ATCGTAGTTTTGCTCCATCAATATCAAAGATAACGATCTATCTTAAAATAGTTTACAATAAGTAATAATGTAAGATAAAC AATATCTAAAATTTAATAAC
Downstream 100 bases:
>100_bases AAACACTATTGTATTCACGGCTGAACACAATAGTATTCATAGAAAAACACAGTAGTATTCACAATCGAATACTACTGTGT TTATGTATGAAGGTAATGAT
Product: glycoside hydrolase family beta-glycosidase
Products: NA
Alternate protein names: Beta-D-glucoside glucohydrolase; Cellobiase; Gentiobiase [H]
Number of amino acids: Translated: 868; Mature: 868
Protein sequence:
>868_residues MKMKQLTVAMITLLLTASCSEKQQDYPFRNPDLPLEERIDDLLSRLTPEEKIGQMMNVTPAIERLGIPTYDWWNEALHGV ARAGRATVFPQAIAMAATFDDNAVHETFTMVSDEARAKYHQYQKDKEYDRYKGLTFWTPNINIFRDPRWGRGMETYGEDP YLTEKMGVAVTRGLQGDDPNYYKTHACAKHYAVHSGPEWNRHEFNAEATPRDLYETYLPAFEALVKEGDVQEVMCAYNRF EGKPCCSSDKLLIDILRNSWGYDNIILSDCGAIDDFWRKDKNTPRHETHPDAESASADAVLNGTDLECGGSYRALNKALA DGKISEKDLDVSLRRLLKGRFELGMFDPDERVPYSKIPYSVVESPEHIAKALDMARKSIVLLKNKNNMLPLDKNIKKIAV VGPNAADSTMLWANYNGFPTKTVTIVEGIRNKVPNAEVIYELGCNHTADFVVTDLGSHVSSTAGQGFASEFFNNTEFEGT PAYKGLAKELHYTTGGNTQFAPNVNLTNFTARFTGEFESPIDGPVEFKLSGNDAFRLYIDTAKVAEVWENEYGAEKLYTL NAKKGEKYPIKIEYMQRTGSADLNFTVGVRTPVDFQATASKVKDADVIVFVGGISPRLEGEEMPVDAEGFRKGDRTNIEI PAVQKEMVKALVATGKPVVYVVCTGSALALNWENDHVNAILNAWYGGQEGGTAVADVLFGDYNPAGRLPITFYKSVDQLP DFQDYSMKGRTYRYMTQTPLYPFGYGLSYTTFDYKNAKLSKDKIASNESVTLSFDIANTGKMDGDEVAQIYIKNPNDPAG PLKAMKAFKRVNVKAGSEQPVSIQLEPKAFQSFNDNTQTMEVRPGKYQILYGGSSDDKTLKKIDLVIE
Sequences:
>Translated_868_residues MKMKQLTVAMITLLLTASCSEKQQDYPFRNPDLPLEERIDDLLSRLTPEEKIGQMMNVTPAIERLGIPTYDWWNEALHGV ARAGRATVFPQAIAMAATFDDNAVHETFTMVSDEARAKYHQYQKDKEYDRYKGLTFWTPNINIFRDPRWGRGMETYGEDP YLTEKMGVAVTRGLQGDDPNYYKTHACAKHYAVHSGPEWNRHEFNAEATPRDLYETYLPAFEALVKEGDVQEVMCAYNRF EGKPCCSSDKLLIDILRNSWGYDNIILSDCGAIDDFWRKDKNTPRHETHPDAESASADAVLNGTDLECGGSYRALNKALA DGKISEKDLDVSLRRLLKGRFELGMFDPDERVPYSKIPYSVVESPEHIAKALDMARKSIVLLKNKNNMLPLDKNIKKIAV VGPNAADSTMLWANYNGFPTKTVTIVEGIRNKVPNAEVIYELGCNHTADFVVTDLGSHVSSTAGQGFASEFFNNTEFEGT PAYKGLAKELHYTTGGNTQFAPNVNLTNFTARFTGEFESPIDGPVEFKLSGNDAFRLYIDTAKVAEVWENEYGAEKLYTL NAKKGEKYPIKIEYMQRTGSADLNFTVGVRTPVDFQATASKVKDADVIVFVGGISPRLEGEEMPVDAEGFRKGDRTNIEI PAVQKEMVKALVATGKPVVYVVCTGSALALNWENDHVNAILNAWYGGQEGGTAVADVLFGDYNPAGRLPITFYKSVDQLP DFQDYSMKGRTYRYMTQTPLYPFGYGLSYTTFDYKNAKLSKDKIASNESVTLSFDIANTGKMDGDEVAQIYIKNPNDPAG PLKAMKAFKRVNVKAGSEQPVSIQLEPKAFQSFNDNTQTMEVRPGKYQILYGGSSDDKTLKKIDLVIE >Mature_868_residues MKMKQLTVAMITLLLTASCSEKQQDYPFRNPDLPLEERIDDLLSRLTPEEKIGQMMNVTPAIERLGIPTYDWWNEALHGV ARAGRATVFPQAIAMAATFDDNAVHETFTMVSDEARAKYHQYQKDKEYDRYKGLTFWTPNINIFRDPRWGRGMETYGEDP YLTEKMGVAVTRGLQGDDPNYYKTHACAKHYAVHSGPEWNRHEFNAEATPRDLYETYLPAFEALVKEGDVQEVMCAYNRF EGKPCCSSDKLLIDILRNSWGYDNIILSDCGAIDDFWRKDKNTPRHETHPDAESASADAVLNGTDLECGGSYRALNKALA DGKISEKDLDVSLRRLLKGRFELGMFDPDERVPYSKIPYSVVESPEHIAKALDMARKSIVLLKNKNNMLPLDKNIKKIAV VGPNAADSTMLWANYNGFPTKTVTIVEGIRNKVPNAEVIYELGCNHTADFVVTDLGSHVSSTAGQGFASEFFNNTEFEGT PAYKGLAKELHYTTGGNTQFAPNVNLTNFTARFTGEFESPIDGPVEFKLSGNDAFRLYIDTAKVAEVWENEYGAEKLYTL NAKKGEKYPIKIEYMQRTGSADLNFTVGVRTPVDFQATASKVKDADVIVFVGGISPRLEGEEMPVDAEGFRKGDRTNIEI PAVQKEMVKALVATGKPVVYVVCTGSALALNWENDHVNAILNAWYGGQEGGTAVADVLFGDYNPAGRLPITFYKSVDQLP DFQDYSMKGRTYRYMTQTPLYPFGYGLSYTTFDYKNAKLSKDKIASNESVTLSFDIANTGKMDGDEVAQIYIKNPNDPAG PLKAMKAFKRVNVKAGSEQPVSIQLEPKAFQSFNDNTQTMEVRPGKYQILYGGSSDDKTLKKIDLVIE
Specific function: Involved in modifying a vir-inducing plant signal molecule. Hydrolyzes coniferin but not cellobiose [H]
COG id: COG1472
COG function: function code G; Beta-glucosidase-related glycosidases
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 3 family [H]
Homologues:
Organism=Escherichia coli, GI1788453, Length=441, Percent_Identity=31.5192743764172, Blast_Score=192, Evalue=1e-49,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019800 - InterPro: IPR002772 - InterPro: IPR001764 - InterPro: IPR017853 - InterPro: IPR011658 [H]
Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]
EC number: =3.2.1.21 [H]
Molecular weight: Translated: 96999; Mature: 96999
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMKQLTVAMITLLLTASCSEKQQDYPFRNPDLPLEERIDDLLSRLTPEEKIGQMMNVTP CCHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCH AIERLGIPTYDWWNEALHGVARAGRATVFPQAIAMAATFDDNAVHETFTMVSDEARAKYH HHHHCCCCCHHHHHHHHHHHHHCCCCEECHHHHEEEEECCCCHHHHHHHHHHHHHHHHHH QYQKDKEYDRYKGLTFWTPNINIFRDPRWGRGMETYGEDPYLTEKMGVAVTRGLQGDDPN HHHCCCCHHHHCCCEEECCCCEEEECCCCCCCCHHCCCCCCCHHHHCHHEECCCCCCCCC YYKTHACAKHYAVHSGPEWNRHEFNAEATPRDLYETYLPAFEALVKEGDVQEVMCAYNRF CCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC EGKPCCSSDKLLIDILRNSWGYDNIILSDCGAIDDFWRKDKNTPRHETHPDAESASADAV CCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEE LNGTDLECGGSYRALNKALADGKISEKDLDVSLRRLLKGRFELGMFDPDERVPYSKIPYS ECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHCCHH VVESPEHIAKALDMARKSIVLLKNKNNMLPLDKNIKKIAVVGPNAADSTMLWANYNGFPT HHCCHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCC KTVTIVEGIRNKVPNAEVIYELGCNHTADFVVTDLGSHVSSTAGQGFASEFFNNTEFEGT HHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEHHHHHHHHHCCCCHHHHHCCCCCCCCC PAYKGLAKELHYTTGGNTQFAPNVNLTNFTARFTGEFESPIDGPVEFKLSGNDAFRLYID CHHHHHHHHHEEECCCCCEECCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEE TAKVAEVWENEYGAEKLYTLNAKKGEKYPIKIEYMQRTGSADLNFTVGVRTPVDFQATAS HHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCHHHHHH KVKDADVIVFVGGISPRLEGEEMPVDAEGFRKGDRTNIEIPAVQKEMVKALVATGKPVVY HCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCCCEECCHHHHHHHHHHHHCCCCEEE VVCTGSALALNWENDHVNAILNAWYGGQEGGTAVADVLFGDYNPAGRLPITFYKSVDQLP EEECCCEEEEECCCCHHHHHHHHHCCCCCCCCCEEHHHCCCCCCCCCCCCHHHHHHHHCC DFQDYSMKGRTYRYMTQTPLYPFGYGLSYTTFDYKNAKLSKDKIASNESVTLSFDIANTG CCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCHHHCCCCCEEEEEEEECCCC KMDGDEVAQIYIKNPNDPAGPLKAMKAFKRVNVKAGSEQPVSIQLEPKAFQSFNDNTQTM CCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHCCCCCCEEE EVRPGKYQILYGGSSDDKTLKKIDLVIE EECCCEEEEEECCCCCCCCEEHEEEEEC >Mature Secondary Structure MKMKQLTVAMITLLLTASCSEKQQDYPFRNPDLPLEERIDDLLSRLTPEEKIGQMMNVTP CCHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCH AIERLGIPTYDWWNEALHGVARAGRATVFPQAIAMAATFDDNAVHETFTMVSDEARAKYH HHHHCCCCCHHHHHHHHHHHHHCCCCEECHHHHEEEEECCCCHHHHHHHHHHHHHHHHHH QYQKDKEYDRYKGLTFWTPNINIFRDPRWGRGMETYGEDPYLTEKMGVAVTRGLQGDDPN HHHCCCCHHHHCCCEEECCCCEEEECCCCCCCCHHCCCCCCCHHHHCHHEECCCCCCCCC YYKTHACAKHYAVHSGPEWNRHEFNAEATPRDLYETYLPAFEALVKEGDVQEVMCAYNRF CCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC EGKPCCSSDKLLIDILRNSWGYDNIILSDCGAIDDFWRKDKNTPRHETHPDAESASADAV CCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEE LNGTDLECGGSYRALNKALADGKISEKDLDVSLRRLLKGRFELGMFDPDERVPYSKIPYS ECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHCCHH VVESPEHIAKALDMARKSIVLLKNKNNMLPLDKNIKKIAVVGPNAADSTMLWANYNGFPT HHCCHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCC KTVTIVEGIRNKVPNAEVIYELGCNHTADFVVTDLGSHVSSTAGQGFASEFFNNTEFEGT HHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEHHHHHHHHHCCCCHHHHHCCCCCCCCC PAYKGLAKELHYTTGGNTQFAPNVNLTNFTARFTGEFESPIDGPVEFKLSGNDAFRLYID CHHHHHHHHHEEECCCCCEECCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEE TAKVAEVWENEYGAEKLYTLNAKKGEKYPIKIEYMQRTGSADLNFTVGVRTPVDFQATAS HHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCHHHHHH KVKDADVIVFVGGISPRLEGEEMPVDAEGFRKGDRTNIEIPAVQKEMVKALVATGKPVVY HCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCCCEECCHHHHHHHHHHHHCCCCEEE VVCTGSALALNWENDHVNAILNAWYGGQEGGTAVADVLFGDYNPAGRLPITFYKSVDQLP EEECCCEEEEECCCCHHHHHHHHHCCCCCCCCCEEHHHCCCCCCCCCCCCHHHHHHHHCC DFQDYSMKGRTYRYMTQTPLYPFGYGLSYTTFDYKNAKLSKDKIASNESVTLSFDIANTG CCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCHHHCCCCCEEEEEEEECCCC KMDGDEVAQIYIKNPNDPAGPLKAMKAFKRVNVKAGSEQPVSIQLEPKAFQSFNDNTQTM CCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHCCCCCCEEE EVRPGKYQILYGGSSDDKTLKKIDLVIE EECCCEEEEEECCCCCCCCEEHEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1537792 [H]