| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
Click here to switch to the map view.
The map label for this gene is ctpB [H]
Identifier: 150006871
GI number: 150006871
Start: 210426
End: 212159
Strand: Reverse
Name: ctpB [H]
Synonym: BDI_0205
Alternate gene names: 150006871
Gene position: 212159-210426 (Counterclockwise)
Preceding gene: 150006872
Following gene: 150006870
Centisome position: 4.41
GC content: 46.89
Gene sequence:
>1734_bases ATGGATAAAAACAAAAGACTGACCGTATGGCTCCCGGTTATCATCGCGGCTAGTATCGCTTTAGGTATCTTTATTGGGAA CCATTATTTATCTATCAGTCAAGGAAAAAAACGGTCCTACTCCAGCGGTAACAAGATAAATGCCATCTTGGACATTATCG ACGAGCAATATGTTGACACGGTTAGCATGTCTAAGCTGGTAGAGAGTACGATCCCGAAAATATTCAGTGAATTAGACCCT CACTCCGTATATATCCCCGCCGAAGACGCTTCCGTGGTGAATGAGGAGCTGGAAGGTTCTTTCAGTGGTATTGGCGTATC ATTTAATATGCAAACCGATACGATCCTAGTGATCAGCGTAATTAGCGGTGGTCCCGCAGAGAAAGCAGGTTTACTGCCCT TCGACCGGATCATCTCGATCAATGATTCTATTTTCTCCGGTAAGAAAAAGAACCAAGGAGAGATCATGAAGACACTCCGG GGCGCAAAGAACAGTACGGTGAAACTAGGCGTACAGCGAGGAAATTCTCCTGAGTTGCTCTATTTTGACGTAACCCGTGG AGATGTCCCTGTTAATTCGGTCGATGTTTCTTTCGAAGCGGCTAAAGGTATAGGTTACATCAAGGTTAGCAAATTCGCCC GGAATACTTATAATGAGTTCATCACGGCGATCGCCAAGCTGAAACAAGCGGGCTGTACCTCTTTCGTGATCGACTTACGG GGTAATACCGGCGGATATATGGATGCCGCTATCAATATGATTAACGAGTTTATGCCGGAAGGACGCTTGATCGTCTACAC GGAAGGTAAGTCGTTCCCCCGTTCCGACGTATACGCAAACGGAACCGGAACTTGTAAAGACGCCCCGATCGTAGTATTGA CCGATGAGATCTCGGCTTCCGCCAGTGAGATATTCTCCGGAGCGATCCAAGATAACGACCGTGGTACGATTATCGGACGA AGAACGTATGGCAAGGGTCTGGTACAAACTCAAATGTCATTGAGCGACGGTTCAGAGATGCGATTGACCATCGCCCGTTA TTACACGCCGTCCGGTCGCTGCATCCAGAAGAAATATGAGATGGGTAATACGGACGCTTACGACCAAGATATCTATAACC GATATATGCACGGCGAGTTCGACTCGGCCGATAGCATCAAGATGGATGATTCCTTGAAATACCAGACCGTAGGCGGACGT ACCGTATACGGCGGGGGCGGTATCATGCCAGATATCTTTATCCCTCGTGACACGAGCGGCGTTACCTCTTACTACTCAAA TGTGGTAAATAGCGGCGTGCTTTACCTGTATGCGCTCGAGTACTCAGACCGCCATCGGGAGAAACTAGGCTCATTCAAGA CTTGGGAGGAATTATATAATTACTTGCAGCAACAACCGCTCCTTTCCGACTTCGTGAACTTCGCCGCTACCAAGGGCATC AAGAGACGTCCTACATTAATTAATATATCCGGCAAGTTAATCGAGAACCAATTGCAAGCGTATATCGTAAGGAATTTCTT CGACGAGGCGGGCTTCTACCCCATTTTCCTAAAAGATGACGTTACCTTATTACGTGCGATCAAGATCTTGCAAGAGGGAA AATCTGTGCCGAATGCGGAACTATTAAAACAATCAGCGAATGGAGACTTACACAGCCAAGCAGGCCCTACGAAAAGATAT GGCCTCTCGAAAAAAAGAATATTCGAGGATTACCTTGTGCGAGCTATCGGATAA
Upstream 100 bases:
>100_bases TATTCCGAGAATTATCGCATAGCGGACGGCTGCGAATTATTGAAGCGTGCCGGTATCATAGTAGATTATATAGATTTGAA CGAATAAATAAAACGTTTTT
Downstream 100 bases:
>100_bases GATCATGGACCGCTTGGAACAGACGGAACTGTTCCAAGCGGCTTCTTGCATCGCCCTTTATCACGCCATACCGGGAGAAG TACAGACCGCCGGCTTTATC
Product: carboxy-terminal processing protease
Products: NA
Alternate protein names: C-terminal processing protease [H]
Number of amino acids: Translated: 577; Mature: 577
Protein sequence:
>577_residues MDKNKRLTVWLPVIIAASIALGIFIGNHYLSISQGKKRSYSSGNKINAILDIIDEQYVDTVSMSKLVESTIPKIFSELDP HSVYIPAEDASVVNEELEGSFSGIGVSFNMQTDTILVISVISGGPAEKAGLLPFDRIISINDSIFSGKKKNQGEIMKTLR GAKNSTVKLGVQRGNSPELLYFDVTRGDVPVNSVDVSFEAAKGIGYIKVSKFARNTYNEFITAIAKLKQAGCTSFVIDLR GNTGGYMDAAINMINEFMPEGRLIVYTEGKSFPRSDVYANGTGTCKDAPIVVLTDEISASASEIFSGAIQDNDRGTIIGR RTYGKGLVQTQMSLSDGSEMRLTIARYYTPSGRCIQKKYEMGNTDAYDQDIYNRYMHGEFDSADSIKMDDSLKYQTVGGR TVYGGGGIMPDIFIPRDTSGVTSYYSNVVNSGVLYLYALEYSDRHREKLGSFKTWEELYNYLQQQPLLSDFVNFAATKGI KRRPTLINISGKLIENQLQAYIVRNFFDEAGFYPIFLKDDVTLLRAIKILQEGKSVPNAELLKQSANGDLHSQAGPTKRY GLSKKRIFEDYLVRAIG
Sequences:
>Translated_577_residues MDKNKRLTVWLPVIIAASIALGIFIGNHYLSISQGKKRSYSSGNKINAILDIIDEQYVDTVSMSKLVESTIPKIFSELDP HSVYIPAEDASVVNEELEGSFSGIGVSFNMQTDTILVISVISGGPAEKAGLLPFDRIISINDSIFSGKKKNQGEIMKTLR GAKNSTVKLGVQRGNSPELLYFDVTRGDVPVNSVDVSFEAAKGIGYIKVSKFARNTYNEFITAIAKLKQAGCTSFVIDLR GNTGGYMDAAINMINEFMPEGRLIVYTEGKSFPRSDVYANGTGTCKDAPIVVLTDEISASASEIFSGAIQDNDRGTIIGR RTYGKGLVQTQMSLSDGSEMRLTIARYYTPSGRCIQKKYEMGNTDAYDQDIYNRYMHGEFDSADSIKMDDSLKYQTVGGR TVYGGGGIMPDIFIPRDTSGVTSYYSNVVNSGVLYLYALEYSDRHREKLGSFKTWEELYNYLQQQPLLSDFVNFAATKGI KRRPTLINISGKLIENQLQAYIVRNFFDEAGFYPIFLKDDVTLLRAIKILQEGKSVPNAELLKQSANGDLHSQAGPTKRY GLSKKRIFEDYLVRAIG >Mature_577_residues MDKNKRLTVWLPVIIAASIALGIFIGNHYLSISQGKKRSYSSGNKINAILDIIDEQYVDTVSMSKLVESTIPKIFSELDP HSVYIPAEDASVVNEELEGSFSGIGVSFNMQTDTILVISVISGGPAEKAGLLPFDRIISINDSIFSGKKKNQGEIMKTLR GAKNSTVKLGVQRGNSPELLYFDVTRGDVPVNSVDVSFEAAKGIGYIKVSKFARNTYNEFITAIAKLKQAGCTSFVIDLR GNTGGYMDAAINMINEFMPEGRLIVYTEGKSFPRSDVYANGTGTCKDAPIVVLTDEISASASEIFSGAIQDNDRGTIIGR RTYGKGLVQTQMSLSDGSEMRLTIARYYTPSGRCIQKKYEMGNTDAYDQDIYNRYMHGEFDSADSIKMDDSLKYQTVGGR TVYGGGGIMPDIFIPRDTSGVTSYYSNVVNSGVLYLYALEYSDRHREKLGSFKTWEELYNYLQQQPLLSDFVNFAATKGI KRRPTLINISGKLIENQLQAYIVRNFFDEAGFYPIFLKDDVTLLRAIKILQEGKSVPNAELLKQSANGDLHSQAGPTKRY GLSKKRIFEDYLVRAIG
Specific function: Involved in the signal transduction pathway leading to the proteolytic activation of the mother cell transcription factor pro-sigma-K during sporulation. The signaling serine protease CtpB triggers pro-sigma-K processing by cleaving the regulatory protein
COG id: COG0793
COG function: function code M; Periplasmic protease
Gene ontology:
Cell location: Forespore intermembrane space. Note=Is expressed in both the mother cell and forespore compartments but that synthesis in the forespore is both necessary and sufficient for the proper timing of pro-sigma-K processing [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PDZ (DHR) domain [H]
Homologues:
Organism=Escherichia coli, GI1788134, Length=332, Percent_Identity=27.1084337349398, Blast_Score=116, Evalue=4e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001478 - InterPro: IPR005151 - InterPro: IPR004447 - InterPro: IPR002477 [H]
Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41; PF01471 PG_binding_1 [H]
EC number: =3.4.21.102 [H]
Molecular weight: Translated: 63829; Mature: 63829
Theoretical pI: Translated: 7.98; Mature: 7.98
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKNKRLTVWLPVIIAASIALGIFIGNHYLSISQGKKRSYSSGNKINAILDIIDEQYVDT CCCCCEEEEEHHHHHHHHHHHHHEECCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH VSMSKLVESTIPKIFSELDPHSVYIPAEDASVVNEELEGSFSGIGVSFNMQTDTILVISV HHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCCEEEEEECCCCEEEEEEE ISGGPAEKAGLLPFDRIISINDSIFSGKKKNQGEIMKTLRGAKNSTVKLGVQRGNSPELL ECCCCCCCCCCCCHHHEEEECCHHHCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCEE YFDVTRGDVPVNSVDVSFEAAKGIGYIKVSKFARNTYNEFITAIAKLKQAGCTSFVIDLR EEEECCCCCCCCEEEEEEEHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC GNTGGYMDAAINMINEFMPEGRLIVYTEGKSFPRSDVYANGTGTCKDAPIVVLTDEISAS CCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEECCCCCCCCCCEEEEECCCCCC ASEIFSGAIQDNDRGTIIGRRTYGKGLVQTQMSLSDGSEMRLTIARYYTPSGRCIQKKYE HHHHHHCCCCCCCCCEEEEECCCCCCHHEEEEECCCCCCEEEEEEEEECCCCCHHHHHHC MGNTDAYDQDIYNRYMHGEFDSADSIKMDDSLKYQTVGGRTVYGGGGIMPDIFIPRDTSG CCCCCCHHHHHHHHHHCCCCCCCCCEECCCCEEEEECCCEEEECCCCCCCCEEECCCCCH VTSYYSNVVNSGVLYLYALEYSDRHREKLGSFKTWEELYNYLQQQPLLSDFVNFAATKGI HHHHHHHHHCCCEEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCC KRRPTLINISGKLIENQLQAYIVRNFFDEAGFYPIFLKDDVTLLRAIKILQEGKSVPNAE CCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCHH LLKQSANGDLHSQAGPTKRYGLSKKRIFEDYLVRAIG HHHHHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHCC >Mature Secondary Structure MDKNKRLTVWLPVIIAASIALGIFIGNHYLSISQGKKRSYSSGNKINAILDIIDEQYVDT CCCCCEEEEEHHHHHHHHHHHHHEECCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH VSMSKLVESTIPKIFSELDPHSVYIPAEDASVVNEELEGSFSGIGVSFNMQTDTILVISV HHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCCEEEEEECCCCEEEEEEE ISGGPAEKAGLLPFDRIISINDSIFSGKKKNQGEIMKTLRGAKNSTVKLGVQRGNSPELL ECCCCCCCCCCCCHHHEEEECCHHHCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCEE YFDVTRGDVPVNSVDVSFEAAKGIGYIKVSKFARNTYNEFITAIAKLKQAGCTSFVIDLR EEEECCCCCCCCEEEEEEEHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC GNTGGYMDAAINMINEFMPEGRLIVYTEGKSFPRSDVYANGTGTCKDAPIVVLTDEISAS CCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEECCCCCCCCCCEEEEECCCCCC ASEIFSGAIQDNDRGTIIGRRTYGKGLVQTQMSLSDGSEMRLTIARYYTPSGRCIQKKYE HHHHHHCCCCCCCCCEEEEECCCCCCHHEEEEECCCCCCEEEEEEEEECCCCCHHHHHHC MGNTDAYDQDIYNRYMHGEFDSADSIKMDDSLKYQTVGGRTVYGGGGIMPDIFIPRDTSG CCCCCCHHHHHHHHHHCCCCCCCCCEECCCCEEEEECCCEEEECCCCCCCCEEECCCCCH VTSYYSNVVNSGVLYLYALEYSDRHREKLGSFKTWEELYNYLQQQPLLSDFVNFAATKGI HHHHHHHHHCCCEEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCC KRRPTLINISGKLIENQLQAYIVRNFFDEAGFYPIFLKDDVTLLRAIKILQEGKSVPNAE CCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCHH LLKQSANGDLHSQAGPTKRYGLSKKRIFEDYLVRAIG HHHHHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9570401; 9384377 [H]