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The map label for this gene is xylA [H]

Identifier: 150006434

GI number: 150006434

Start: 4869617

End: 4870933

Strand: Reverse

Name: xylA [H]

Synonym: BVU_3953

Alternate gene names: 150006434

Gene position: 4870933-4869617 (Counterclockwise)

Preceding gene: 150006435

Following gene: 150006433

Centisome position: 94.34

GC content: 45.79

Gene sequence:

>1317_bases
ATGGCTACAAAAGAGTATTTTCCCGGTATAGGAAAGATTAAATTTGAAGGTAAGGAAAGTAAGAACCCGATGGCGTTCCG
TTATTATGATGCTGAAAAGGTAATTAACGGCAAGAAGATGAAAGACTGGTTGAAGTTTGCTATGGCATGGTGGCATACGT
TGTGTGCCGAGGGCGGTGACCAGTTTGGCGGCGGAACAAAGAAATTCCCTTGGAACGGTGATGCCGATAAGGTGCAGGCT
GCCAAGAATAAGATGGATGCCGGCTTTGAATTCATGCAGAAAATGGGAATCGAATATTATTGTTTCCATGATGTGGACTT
GTGTGAGGAAGCCGATACAATCGAGGAATATGAAGCGAATCTGAAAGAGATAGTTGCTTATGCCAAACAGAAACAGGCTG
AAACCGGAATCAAATTGTTATGGGGTACGGCAAATGTTTTTGGTCATGCACGCTATATGAACGGGGCTGCTACAAACCCC
GAATTTGATGTGGTTGCCCGCGCTGCTGTCCAGATAAAGAACGCTATTGACGCTACCATCGAACTGGGTGGCTCCAATTA
CGTGTTCTGGGGTGGACGTGAAGGGTATATGTCTTTATTGAATACAGATCAGAAGCGTGAGAAAGAACATCTGGCTCAGA
TGTTGACCATTGCCCGCGATTATGCCCGGAGCAAAGGGTTTACAGGTACTTTCCTGATTGAACCCAAACCGATGGAGCCG
ACTAAGCATCAATATGATGTGGATACCGAAACTGTGGTAGGGTTCTTGAAAACTCACGGACTGGACAAGGATTTCAAGGT
GAACATTGAAGTGAATCATGCTACGTTGGCTGGTCATACATTTGAACATGAACTGGCTGTTGCGGTAGATAACGGAATGT
TGGGATCTATTGACGCTAACCGTGGCGATTATCAGAACGGATGGGATACAGACCAGTTCCCTATCGACAATTACGAACTG
ACCCAGGCCATGATGCAGATTATCCGCAATGGCGGTTTGGGTAATGGCGGTACCAACTTTGATGCCAAGACACGTCGTAA
CTCTACTGATCTGGAAGATATCTTTATCGCCCATATTGCAGGTATGGACGCTATGGCGCGTGCATTGGAAAGTGCTGCTG
CTTTGCTTAATGAATCTCCTTACTGCAAGATGTTGTCAGACCGCTATGCTTCATTCGACAGTGGCAAAGGCAAAGAATTT
GAAGAAGGCAAGCTGACACTGGAAGACGTAGTGGCTTATGCTAAGCAGAATGGTGAGCCCAAGCAAGTAAGCGGTAAGCA
GGAATTGTACGAAGCCATCGTAAATATGTATTGCTGA

Upstream 100 bases:

>100_bases
GCCTTTTAAGGACCTTCGGATAAAGAAATGGCTATCCGCCTGCGTGTTGAAAAAAAATAGTAGATAAATTAGAACAAGTT
ATTAAAATAAGTAAAGAATT

Downstream 100 bases:

>100_bases
TCCGGCCGGAATGGTATTGCACAAGTTTTACCCTTGCAGACCTTTTTTAAGAAGGAGGGCTGTGCAATGAAGTCTGAATG
AATTCTGCTAACGGATTATT

Product: xylose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 437

Protein sequence:

>438_residues
MATKEYFPGIGKIKFEGKESKNPMAFRYYDAEKVINGKKMKDWLKFAMAWWHTLCAEGGDQFGGGTKKFPWNGDADKVQA
AKNKMDAGFEFMQKMGIEYYCFHDVDLCEEADTIEEYEANLKEIVAYAKQKQAETGIKLLWGTANVFGHARYMNGAATNP
EFDVVARAAVQIKNAIDATIELGGSNYVFWGGREGYMSLLNTDQKREKEHLAQMLTIARDYARSKGFTGTFLIEPKPMEP
TKHQYDVDTETVVGFLKTHGLDKDFKVNIEVNHATLAGHTFEHELAVAVDNGMLGSIDANRGDYQNGWDTDQFPIDNYEL
TQAMMQIIRNGGLGNGGTNFDAKTRRNSTDLEDIFIAHIAGMDAMARALESAAALLNESPYCKMLSDRYASFDSGKGKEF
EEGKLTLEDVVAYAKQNGEPKQVSGKQELYEAIVNMYC

Sequences:

>Translated_438_residues
MATKEYFPGIGKIKFEGKESKNPMAFRYYDAEKVINGKKMKDWLKFAMAWWHTLCAEGGDQFGGGTKKFPWNGDADKVQA
AKNKMDAGFEFMQKMGIEYYCFHDVDLCEEADTIEEYEANLKEIVAYAKQKQAETGIKLLWGTANVFGHARYMNGAATNP
EFDVVARAAVQIKNAIDATIELGGSNYVFWGGREGYMSLLNTDQKREKEHLAQMLTIARDYARSKGFTGTFLIEPKPMEP
TKHQYDVDTETVVGFLKTHGLDKDFKVNIEVNHATLAGHTFEHELAVAVDNGMLGSIDANRGDYQNGWDTDQFPIDNYEL
TQAMMQIIRNGGLGNGGTNFDAKTRRNSTDLEDIFIAHIAGMDAMARALESAAALLNESPYCKMLSDRYASFDSGKGKEF
EEGKLTLEDVVAYAKQNGEPKQVSGKQELYEAIVNMYC
>Mature_437_residues
ATKEYFPGIGKIKFEGKESKNPMAFRYYDAEKVINGKKMKDWLKFAMAWWHTLCAEGGDQFGGGTKKFPWNGDADKVQAA
KNKMDAGFEFMQKMGIEYYCFHDVDLCEEADTIEEYEANLKEIVAYAKQKQAETGIKLLWGTANVFGHARYMNGAATNPE
FDVVARAAVQIKNAIDATIELGGSNYVFWGGREGYMSLLNTDQKREKEHLAQMLTIARDYARSKGFTGTFLIEPKPMEPT
KHQYDVDTETVVGFLKTHGLDKDFKVNIEVNHATLAGHTFEHELAVAVDNGMLGSIDANRGDYQNGWDTDQFPIDNYELT
QAMMQIIRNGGLGNGGTNFDAKTRRNSTDLEDIFIAHIAGMDAMARALESAAALLNESPYCKMLSDRYASFDSGKGKEFE
EGKLTLEDVVAYAKQNGEPKQVSGKQELYEAIVNMYC

Specific function: Unknown

COG id: COG2115

COG function: function code G; Xylose isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xylose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI1789988, Length=434, Percent_Identity=47.926267281106, Blast_Score=441, Evalue=1e-125,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307
- InterPro:   IPR013452
- InterPro:   IPR001998 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.3.1.5 [H]

Molecular weight: Translated: 49037; Mature: 48906

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS00172 XYLOSE_ISOMERASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKEYFPGIGKIKFEGKESKNPMAFRYYDAEKVINGKKMKDWLKFAMAWWHTLCAEGGD
CCCCCCCCCCCEEEECCCCCCCCCEEEEECHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC
QFGGGTKKFPWNGDADKVQAAKNKMDAGFEFMQKMGIEYYCFHDVDLCEEADTIEEYEAN
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHH
LKEIVAYAKQKQAETGIKLLWGTANVFGHARYMNGAATNPEFDVVARAAVQIKNAIDATI
HHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCEEE
ELGGSNYVFWGGREGYMSLLNTDQKREKEHLAQMLTIARDYARSKGFTGTFLIEPKPMEP
EECCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
TKHQYDVDTETVVGFLKTHGLDKDFKVNIEVNHATLAGHTFEHELAVAVDNGMLGSIDAN
CCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCEEEEEECCCEEECCCCC
RGDYQNGWDTDQFPIDNYELTQAMMQIIRNGGLGNGGTNFDAKTRRNSTDLEDIFIAHIA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
GMDAMARALESAAALLNESPYCKMLSDRYASFDSGKGKEFEEGKLTLEDVVAYAKQNGEP
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
KQVSGKQELYEAIVNMYC
CCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
ATKEYFPGIGKIKFEGKESKNPMAFRYYDAEKVINGKKMKDWLKFAMAWWHTLCAEGGD
CCCCCCCCCCEEEECCCCCCCCCEEEEECHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC
QFGGGTKKFPWNGDADKVQAAKNKMDAGFEFMQKMGIEYYCFHDVDLCEEADTIEEYEAN
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHH
LKEIVAYAKQKQAETGIKLLWGTANVFGHARYMNGAATNPEFDVVARAAVQIKNAIDATI
HHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCEEE
ELGGSNYVFWGGREGYMSLLNTDQKREKEHLAQMLTIARDYARSKGFTGTFLIEPKPMEP
EECCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
TKHQYDVDTETVVGFLKTHGLDKDFKVNIEVNHATLAGHTFEHELAVAVDNGMLGSIDAN
CCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCEEEEEECCCEEECCCCC
RGDYQNGWDTDQFPIDNYELTQAMMQIIRNGGLGNGGTNFDAKTRRNSTDLEDIFIAHIA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
GMDAMARALESAAALLNESPYCKMLSDRYASFDSGKGKEFEEGKLTLEDVVAYAKQNGEP
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
KQVSGKQELYEAIVNMYC
CCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA