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The map label for this gene is kpsD [H]

Identifier: 150006433

GI number: 150006433

Start: 4866885

End: 4869377

Strand: Reverse

Name: kpsD [H]

Synonym: BVU_3952

Alternate gene names: 150006433

Gene position: 4869377-4866885 (Counterclockwise)

Preceding gene: 150006434

Following gene: 150006432

Centisome position: 94.31

GC content: 46.85

Gene sequence:

>2493_bases
ATGATAAAAAAACTATTATCCGTACTGGTCTTAGTTTTTGCCCTCTCGGGTTCTGTGCTTGCACAGCAATCTATGAGTGA
CCAACAGGTGTTGGAATATGTGAAGACGGGCATGCAACAAGGAAAAGACCAACGTCAGATTGCTACAGAGTTAGCCCGTA
GAGGAGTGACACAAGAACAGGCTAAGCGTGTAAAGAAACTTTATGAACAGCAAAATGGGTCTGCTGATAAAGACGCAAAT
GCAACGATGCAAAATCGGAACCGTTTGCGTGAAAAGACAAAGACGCAGGAAGATATCTATGTAACAGAGAATTTTACTTT
CGACCAACGTCCGGCTGCGGGCAGAGTGGTAGGGAAGAACTTGTCGGACAGTGTTTCTGCCAATCGCTATTACGAGGGGA
TGGGCATGGGCGATATGGAAGAAATGCAGAAAGATAAGGTGTACGGACGGGACATTTTTGAAACCAGAAACCTTACATTC
GAGCCGAGTGTGAATCTGGCTACTCCTCCTAATTACCGTCTGGGGCCGGGTGATGAGGTAATCATTGACATCTGGGGTAC
AAACCAGGCCACCATCCGCGATAATGTATCTCCGGACGGATCTATCACGATCCCCGATTTGGGATTGATTTATCTGAACG
GCATGACTATTGCCGAAGCCAACCAATATTTGCGTAAAGAACTGAATAAGATTTATGCAGGGCTTGATAATGAACAGAAC
CCGTCCTCACAAATCAAGGTTACTTTGGGAAACAGCCGGACGATCCAGGTGAACGTGATGGGGGAAGTGTTCCAACCGGG
AACTTATGCATTGTCTTCTTTCTCTACCGTGTTTCATGCACTGTACCGTGCCGGTGGCGTGAGCGATATCGGTAGCTTGC
GCAATATACAAGTAGTGCGCGGAGGACAGAAAATCGCTACCGTAGATGTGTACGATTTTATTATGAAAGGTAAAATCAAT
GATGATATCCGCTTGCAGGAAGGCGATGTGATCATCGTTCCTCCATACGAGGCGTTGGTTAGCATAGAGGGTAATGTGAA
ACGCCCCATGAAATACGAGATGAAAAACAACGAAAGTGTTGCCACGTTGTTGAAGTATGCCGGTGGATTTTCGGGGGATG
CCTATACCCGTTCTCTCCGCATGATTCGTCAAAACGGAAAGGAGTATCAGATTTATACGATTGATGATATTGATTATTCC
GTATTCCAGGTAAAAGATGGTGATGCGCTGACTGCTGAAGCTATTCTGGACCGTTTTGAGAACAAGCTTGAAATCAAGGG
GGCTGTCTATCGTCCGGGCATTTATCAGTTCGGAGGAACCTTGAATACAGTCCGCCAACTGGTGGAAAAGGCTGAAGGCC
TTATGGGTGATGCCTTTACAGGACGTGCGGTGTTGCATCGCGAGCGCGAGAATCTGAAGAAAGAGGTTATTCAAGTAGAT
ATAAAAGGCATCATGGACGGTACTGCACCCGATGTACCTTTGCAGCGTAATGATGTGCTTTATATTCCCAGTATTCATGA
CTTGGAGGATGTGGGAAGCGTCATGGTGTATGGTGAGGTTGCCCGTCCGGGTGAGTTCGCTTTTGCCGACAATACGACTT
TGGAGGATATTATAATCCAGGCTGGCGGATTGATGGAGTCGGCTTCTACCGTCCGTGTGGATGTTTCCCGCCGTATCAAG
GATAGCAAAGGTACGGAAGCGGTTTCCACCATAGGACAAATGTACTCGTTTTCTCTGAAAGACGGTTTTGTGATAGACGG
AGAACCGGGTTTTGTGTTGCAGCCATACGATCAGGTATATGTGCGTAAGAGCCCTGCTTATCAGGAACAGGTGAATGTGC
AGGTGACCGGTGAGGTTTTGTATGAAGGTGATTATGCGCTGACAGAGAAGAGCGAACGTCTTTCCGATTTGATCAAGAAG
GCAGGTGGAGTGACTCCGTTTGCTTATATCAAAGGGGCCCGTTTAAGCCGTCGTATCAATGCCGATGAACGCAAACGTAT
GGAAATGGTTCTGGATATGGCCAAGACTGGAAAGGACTCCATTGATGTCAACCGGCTGGATTTGGGAGATATCTATTATG
TGGGTATCGATTTGGAAAAAGCGATGCTTAAACCCGGCTCCAGTGCGGATATCGTATTGCGTGAGGGGGATGTGATTGAA
ATTCCCGAATACAACAACACGGTACGTATCAGCGGGGCTGTGATGTATCCCAATACCGTTTCATTTGAAGATGGCAAGAC
GTTGAAATATTATATAGAGCAGGCCGGAGGTTATGGTTTCCGTGCGAAGAAGAGCAAGGCGTATATTGTATATATGAACG
GTCAGGTGAAGAGAGCGAAGAAGGGTAGCCGTGAGCTGATCCAGCCGGGCTGTGAGGTGATTGTTCCGGTGAAGGAAAAG
AGCAACTGGTCTTTGCAGAACACCTTGTCCATAGCAACCACCAGTGCGTCGTTGGCTACTATGATTGCATCTATTGCTAA
TATCTTAAAATAG

Upstream 100 bases:

>100_bases
TTTATATTTGTTAGAGGGATATTTATGAAATAATACTCGCCTATATCGAAAATAATATCTACCTTTGCGGCTGCTAAATT
ACTAAGTTTATTGAATTTAT

Downstream 100 bases:

>100_bases
AAACAGTATGGCGGAAGATAAGAATTATACGAATAATACGGAAAGACCACGGGAAGACGAGGAGTTGGAAATTGATTTGA
TGGAGTATGTCCGTAAGTTG

Product: polysialic acid transport protein kpsD precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 830; Mature: 830

Protein sequence:

>830_residues
MIKKLLSVLVLVFALSGSVLAQQSMSDQQVLEYVKTGMQQGKDQRQIATELARRGVTQEQAKRVKKLYEQQNGSADKDAN
ATMQNRNRLREKTKTQEDIYVTENFTFDQRPAAGRVVGKNLSDSVSANRYYEGMGMGDMEEMQKDKVYGRDIFETRNLTF
EPSVNLATPPNYRLGPGDEVIIDIWGTNQATIRDNVSPDGSITIPDLGLIYLNGMTIAEANQYLRKELNKIYAGLDNEQN
PSSQIKVTLGNSRTIQVNVMGEVFQPGTYALSSFSTVFHALYRAGGVSDIGSLRNIQVVRGGQKIATVDVYDFIMKGKIN
DDIRLQEGDVIIVPPYEALVSIEGNVKRPMKYEMKNNESVATLLKYAGGFSGDAYTRSLRMIRQNGKEYQIYTIDDIDYS
VFQVKDGDALTAEAILDRFENKLEIKGAVYRPGIYQFGGTLNTVRQLVEKAEGLMGDAFTGRAVLHRERENLKKEVIQVD
IKGIMDGTAPDVPLQRNDVLYIPSIHDLEDVGSVMVYGEVARPGEFAFADNTTLEDIIIQAGGLMESASTVRVDVSRRIK
DSKGTEAVSTIGQMYSFSLKDGFVIDGEPGFVLQPYDQVYVRKSPAYQEQVNVQVTGEVLYEGDYALTEKSERLSDLIKK
AGGVTPFAYIKGARLSRRINADERKRMEMVLDMAKTGKDSIDVNRLDLGDIYYVGIDLEKAMLKPGSSADIVLREGDVIE
IPEYNNTVRISGAVMYPNTVSFEDGKTLKYYIEQAGGYGFRAKKSKAYIVYMNGQVKRAKKGSRELIQPGCEVIVPVKEK
SNWSLQNTLSIATTSASLATMIASIANILK

Sequences:

>Translated_830_residues
MIKKLLSVLVLVFALSGSVLAQQSMSDQQVLEYVKTGMQQGKDQRQIATELARRGVTQEQAKRVKKLYEQQNGSADKDAN
ATMQNRNRLREKTKTQEDIYVTENFTFDQRPAAGRVVGKNLSDSVSANRYYEGMGMGDMEEMQKDKVYGRDIFETRNLTF
EPSVNLATPPNYRLGPGDEVIIDIWGTNQATIRDNVSPDGSITIPDLGLIYLNGMTIAEANQYLRKELNKIYAGLDNEQN
PSSQIKVTLGNSRTIQVNVMGEVFQPGTYALSSFSTVFHALYRAGGVSDIGSLRNIQVVRGGQKIATVDVYDFIMKGKIN
DDIRLQEGDVIIVPPYEALVSIEGNVKRPMKYEMKNNESVATLLKYAGGFSGDAYTRSLRMIRQNGKEYQIYTIDDIDYS
VFQVKDGDALTAEAILDRFENKLEIKGAVYRPGIYQFGGTLNTVRQLVEKAEGLMGDAFTGRAVLHRERENLKKEVIQVD
IKGIMDGTAPDVPLQRNDVLYIPSIHDLEDVGSVMVYGEVARPGEFAFADNTTLEDIIIQAGGLMESASTVRVDVSRRIK
DSKGTEAVSTIGQMYSFSLKDGFVIDGEPGFVLQPYDQVYVRKSPAYQEQVNVQVTGEVLYEGDYALTEKSERLSDLIKK
AGGVTPFAYIKGARLSRRINADERKRMEMVLDMAKTGKDSIDVNRLDLGDIYYVGIDLEKAMLKPGSSADIVLREGDVIE
IPEYNNTVRISGAVMYPNTVSFEDGKTLKYYIEQAGGYGFRAKKSKAYIVYMNGQVKRAKKGSRELIQPGCEVIVPVKEK
SNWSLQNTLSIATTSASLATMIASIANILK
>Mature_830_residues
MIKKLLSVLVLVFALSGSVLAQQSMSDQQVLEYVKTGMQQGKDQRQIATELARRGVTQEQAKRVKKLYEQQNGSADKDAN
ATMQNRNRLREKTKTQEDIYVTENFTFDQRPAAGRVVGKNLSDSVSANRYYEGMGMGDMEEMQKDKVYGRDIFETRNLTF
EPSVNLATPPNYRLGPGDEVIIDIWGTNQATIRDNVSPDGSITIPDLGLIYLNGMTIAEANQYLRKELNKIYAGLDNEQN
PSSQIKVTLGNSRTIQVNVMGEVFQPGTYALSSFSTVFHALYRAGGVSDIGSLRNIQVVRGGQKIATVDVYDFIMKGKIN
DDIRLQEGDVIIVPPYEALVSIEGNVKRPMKYEMKNNESVATLLKYAGGFSGDAYTRSLRMIRQNGKEYQIYTIDDIDYS
VFQVKDGDALTAEAILDRFENKLEIKGAVYRPGIYQFGGTLNTVRQLVEKAEGLMGDAFTGRAVLHRERENLKKEVIQVD
IKGIMDGTAPDVPLQRNDVLYIPSIHDLEDVGSVMVYGEVARPGEFAFADNTTLEDIIIQAGGLMESASTVRVDVSRRIK
DSKGTEAVSTIGQMYSFSLKDGFVIDGEPGFVLQPYDQVYVRKSPAYQEQVNVQVTGEVLYEGDYALTEKSERLSDLIKK
AGGVTPFAYIKGARLSRRINADERKRMEMVLDMAKTGKDSIDVNRLDLGDIYYVGIDLEKAMLKPGSSADIVLREGDVIE
IPEYNNTVRISGAVMYPNTVSFEDGKTLKYYIEQAGGYGFRAKKSKAYIVYMNGQVKRAKKGSRELIQPGCEVIVPVKEK
SNWSLQNTLSIATTSASLATMIASIANILK

Specific function: Involved in the translocation of the polysialic acid capsule across the outer membrane to the cell surface. May function as the periplasmic binding element of the PSA transport system, in which it transiently interacts with the membrane component of the t

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli K5 kpsD [H]

Homologues:

Organism=Escherichia coli, GI1788376, Length=248, Percent_Identity=25.8064516129032, Blast_Score=66, Evalue=1e-11,
Organism=Escherichia coli, GI1787218, Length=251, Percent_Identity=26.2948207171315, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715 [H]

Pfam domain/function: PF02563 Poly_export [H]

EC number: NA

Molecular weight: Translated: 92252; Mature: 92252

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKLLSVLVLVFALSGSVLAQQSMSDQQVLEYVKTGMQQGKDQRQIATELARRGVTQEQ
CHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHH
AKRVKKLYEQQNGSADKDANATMQNRNRLREKTKTQEDIYVTENFTFDQRPAAGRVVGKN
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEECCC
LSDSVSANRYYEGMGMGDMEEMQKDKVYGRDIFETRNLTFEPSVNLATPPNYRLGPGDEV
CCCCCCCCCEECCCCCCCHHHHHHHHCCCCHHHHCCCEEECCCCCCCCCCCCCCCCCCEE
IIDIWGTNQATIRDNVSPDGSITIPDLGLIYLNGMTIAEANQYLRKELNKIYAGLDNEQN
EEEEECCCCEEEECCCCCCCCEECCCCEEEEECCEEHHHHHHHHHHHHHHHHCCCCCCCC
PSSQIKVTLGNSRTIQVNVMGEVFQPGTYALSSFSTVFHALYRAGGVSDIGSLRNIQVVR
CCCEEEEEECCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCEEEEEE
GGQKIATVDVYDFIMKGKINDDIRLQEGDVIIVPPYEALVSIEGNVKRPMKYEMKNNESV
CCCEEEEEEHHHHHHCCCCCCCEEEECCCEEEECCHHHEEEECCCCCCCEEEECCCCCHH
ATLLKYAGGFSGDAYTRSLRMIRQNGKEYQIYTIDDIDYSVFQVKDGDALTAEAILDRFE
HHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHC
NKLEIKGAVYRPGIYQFGGTLNTVRQLVEKAEGLMGDAFTGRAVLHRERENLKKEVIQVD
CCEEECEEEECCCHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
IKGIMDGTAPDVPLQRNDVLYIPSIHDLEDVGSVMVYGEVARPGEFAFADNTTLEDIIIQ
HHHHCCCCCCCCCCCCCCEEECCCCCCHHHCCCEEEEEECCCCCCEEECCCCCHHHHHHH
AGGLMESASTVRVDVSRRIKDSKGTEAVSTIGQMYSFSLKDGFVIDGEPGFVLQPYDQVY
CCCCCCCCCEEEEEHHHHCCCCCCHHHHHHHHHHHEEECCCCEEEECCCCCEECCCHHEE
VRKSPAYQEQVNVQVTGEVLYEGDYALTEKSERLSDLIKKAGGVTPFAYIKGARLSRRIN
EECCCCHHHHEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCHHHHCCC
ADERKRMEMVLDMAKTGKDSIDVNRLDLGDIYYVGIDLEKAMLKPGSSADIVLREGDVIE
CHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEEEHHHHHCCCCCCCEEEEECCCEEE
IPEYNNTVRISGAVMYPNTVSFEDGKTLKYYIEQAGGYGFRAKKSKAYIVYMNGQVKRAK
CCCCCCEEEEEEEEECCCEECCCCCCEEEEHHHHCCCCCEEECCCCEEEEEECCEEEHHH
KGSRELIQPGCEVIVPVKEKSNWSLQNTLSIATTSASLATMIASIANILK
CCCHHHHCCCCEEEEEECCCCCCCHHHEEEEEECHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MIKKLLSVLVLVFALSGSVLAQQSMSDQQVLEYVKTGMQQGKDQRQIATELARRGVTQEQ
CHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHH
AKRVKKLYEQQNGSADKDANATMQNRNRLREKTKTQEDIYVTENFTFDQRPAAGRVVGKN
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEECCC
LSDSVSANRYYEGMGMGDMEEMQKDKVYGRDIFETRNLTFEPSVNLATPPNYRLGPGDEV
CCCCCCCCCEECCCCCCCHHHHHHHHCCCCHHHHCCCEEECCCCCCCCCCCCCCCCCCEE
IIDIWGTNQATIRDNVSPDGSITIPDLGLIYLNGMTIAEANQYLRKELNKIYAGLDNEQN
EEEEECCCCEEEECCCCCCCCEECCCCEEEEECCEEHHHHHHHHHHHHHHHHCCCCCCCC
PSSQIKVTLGNSRTIQVNVMGEVFQPGTYALSSFSTVFHALYRAGGVSDIGSLRNIQVVR
CCCEEEEEECCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCEEEEEE
GGQKIATVDVYDFIMKGKINDDIRLQEGDVIIVPPYEALVSIEGNVKRPMKYEMKNNESV
CCCEEEEEEHHHHHHCCCCCCCEEEECCCEEEECCHHHEEEECCCCCCCEEEECCCCCHH
ATLLKYAGGFSGDAYTRSLRMIRQNGKEYQIYTIDDIDYSVFQVKDGDALTAEAILDRFE
HHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHC
NKLEIKGAVYRPGIYQFGGTLNTVRQLVEKAEGLMGDAFTGRAVLHRERENLKKEVIQVD
CCEEECEEEECCCHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
IKGIMDGTAPDVPLQRNDVLYIPSIHDLEDVGSVMVYGEVARPGEFAFADNTTLEDIIIQ
HHHHCCCCCCCCCCCCCCEEECCCCCCHHHCCCEEEEEECCCCCCEEECCCCCHHHHHHH
AGGLMESASTVRVDVSRRIKDSKGTEAVSTIGQMYSFSLKDGFVIDGEPGFVLQPYDQVY
CCCCCCCCCEEEEEHHHHCCCCCCHHHHHHHHHHHEEECCCCEEEECCCCCEECCCHHEE
VRKSPAYQEQVNVQVTGEVLYEGDYALTEKSERLSDLIKKAGGVTPFAYIKGARLSRRIN
EECCCCHHHHEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCHHHHCCC
ADERKRMEMVLDMAKTGKDSIDVNRLDLGDIYYVGIDLEKAMLKPGSSADIVLREGDVIE
CHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEEEHHHHHCCCCCCCEEEEECCCEEE
IPEYNNTVRISGAVMYPNTVSFEDGKTLKYYIEQAGGYGFRAKKSKAYIVYMNGQVKRAK
CCCCCCEEEEEEEEECCCEECCCCCCEEEEHHHHCCCCCEEECCCCEEEEEECCEEEHHH
KGSRELIQPGCEVIVPVKEKSNWSLQNTLSIATTSASLATMIASIANILK
CCCHHHHCCCCEEEEEECCCCCCCHHHEEEEEECHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8021185 [H]