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The map label for this gene is rnfC [H]

Identifier: 150006370

GI number: 150006370

Start: 4793772

End: 4795109

Strand: Reverse

Name: rnfC [H]

Synonym: BVU_3889

Alternate gene names: 150006370

Gene position: 4795109-4793772 (Counterclockwise)

Preceding gene: 150006371

Following gene: 150006369

Centisome position: 92.87

GC content: 47.61

Gene sequence:

>1338_bases
GTGAAGACATTTAGAATTGGTGGAGTACATCCAGCAGAAAATAAATTGTCAGCAGGCAAAGCCATTGAAACACTTGCACT
TCCTAAGCAAGCGGTATTTCCTTTGTCACAGCATATCGGTGCTCCTGCTACTGCCATCGTGAAAAAAGGCGATGTGGTGA
AGGTAGGTACGAAGATTGCTGAGGCGGGTGGCTTTGTTTCAGCAGCCATCTTCTCGTCTGTATCCGGTAAAGTGAACAAG
GTAGACGCCGTAATCGATGCTAGCGGTTACCGCAAGCCGGCTATCTTTATCGATGTGGATGGTGACGAATGGGAAGAATC
AATAGACCGCAGTTCGACATTGGTGAAAGAGTGTGCTCTCACACCCGAAGAAATCGTTGCTAAAGTGAAAAATGCAGGTG
TAGTAGGTATGGGCGGTGCTTGTTTCCCTACTCATGTGAAACTTTCTCCTCCTCCGGGCTGCAAGGCGGAATGTGTAATT
ATCAATGCTGTAGAGTGTGAGCCTTACCTCACTGCCGATCATCGTTTGATGTTGGAGAAGGCAGACGAAGTACTGGTGGG
TGTAAGCATCCTGATGAAAGCTGCAAAAGTGACCAAGGGATATATCGGTATTGAAAATAATAAACCGGATGCTATTAAGT
TGATGACTGAAAAGGCTGCTCAGTATCCCGGTATAGAGGTAGTTCCTTTGCAGGTGAAATATCCGCAAGGTGGTGAGAAA
CAGTTGATAGATGCTGTGATCGGTCGCCAGGTTCCTGCTCCTCCCGCTATTCCTATCAATGTGGGTGCGGTAGTTCAGAA
TGTAGGTACTGCATTTGCCGTTTATGAAGCCGTTCAGAAAAACAAACCTTTGTTTGAACGTATCGTGACTGTTACGGGTA
AGTCTGTCAAGAACCCCTCCAACTTCCTCACCCGTATGGGTACCCCGATGAGCCAGCTGATTGATGCGGCTGGCGGTTTG
CCCGAAGATACGGGAAAAGTGATTGGTGGCGGTCCGATGATGGGTAAAGCACTGGTTAATACGGAAGTTCCCATTTGTAA
AGGTAGTTCGGGTGTGCTGATTATGAATGATAAGGAAGCTGCCCGTGCGGAAGCTCAGCCCTGTATCCGCTGTGCCAAGT
GCGTCAGTGTGTGTCCTATGGGATTGGAGCCTTTCTTGTTGGCGACACTTTCAGCTCATAAGGACTGGGAGAGAGTAGAA
AAAGAAGATGTAATGTCGTGCATCGAGTGCGGTTCGTGTCAGTTTACATGTCCGTCTCATCGTTATTTGCTGGACTATAT
CCGTTTGGGTAAGGGCACAGTAGGCGGTATCATCCGTGCACGTAATGCTAAAAAATAA

Upstream 100 bases:

>100_bases
AAAGGTGGAAACTCCGAAAGCGGAAGCGGTGAAAGCTGAGGCTCCGAAAACGGAAGCATAATCAAAATTCAAAGTAAGTA
AAAATTAAAAAGATATAACA

Downstream 100 bases:

>100_bases
TTCGACAAAATAGTATGGCTAATAAATTAATAGTATCATTATCGCCTCACGTTCATAGCGGTGACAGCATACAGAAGAAT
ATGTATGGTGTACTCATTGC

Product: Na+-transporting NADH:ubiquinone oxidoreductase, electron transport complex protein rnfC

Products: NA

Alternate protein names: Nitrogen fixation protein rnfC [H]

Number of amino acids: Translated: 445; Mature: 445

Protein sequence:

>445_residues
MKTFRIGGVHPAENKLSAGKAIETLALPKQAVFPLSQHIGAPATAIVKKGDVVKVGTKIAEAGGFVSAAIFSSVSGKVNK
VDAVIDASGYRKPAIFIDVDGDEWEESIDRSSTLVKECALTPEEIVAKVKNAGVVGMGGACFPTHVKLSPPPGCKAECVI
INAVECEPYLTADHRLMLEKADEVLVGVSILMKAAKVTKGYIGIENNKPDAIKLMTEKAAQYPGIEVVPLQVKYPQGGEK
QLIDAVIGRQVPAPPAIPINVGAVVQNVGTAFAVYEAVQKNKPLFERIVTVTGKSVKNPSNFLTRMGTPMSQLIDAAGGL
PEDTGKVIGGGPMMGKALVNTEVPICKGSSGVLIMNDKEAARAEAQPCIRCAKCVSVCPMGLEPFLLATLSAHKDWERVE
KEDVMSCIECGSCQFTCPSHRYLLDYIRLGKGTVGGIIRARNAKK

Sequences:

>Translated_445_residues
MKTFRIGGVHPAENKLSAGKAIETLALPKQAVFPLSQHIGAPATAIVKKGDVVKVGTKIAEAGGFVSAAIFSSVSGKVNK
VDAVIDASGYRKPAIFIDVDGDEWEESIDRSSTLVKECALTPEEIVAKVKNAGVVGMGGACFPTHVKLSPPPGCKAECVI
INAVECEPYLTADHRLMLEKADEVLVGVSILMKAAKVTKGYIGIENNKPDAIKLMTEKAAQYPGIEVVPLQVKYPQGGEK
QLIDAVIGRQVPAPPAIPINVGAVVQNVGTAFAVYEAVQKNKPLFERIVTVTGKSVKNPSNFLTRMGTPMSQLIDAAGGL
PEDTGKVIGGGPMMGKALVNTEVPICKGSSGVLIMNDKEAARAEAQPCIRCAKCVSVCPMGLEPFLLATLSAHKDWERVE
KEDVMSCIECGSCQFTCPSHRYLLDYIRLGKGTVGGIIRARNAKK
>Mature_445_residues
MKTFRIGGVHPAENKLSAGKAIETLALPKQAVFPLSQHIGAPATAIVKKGDVVKVGTKIAEAGGFVSAAIFSSVSGKVNK
VDAVIDASGYRKPAIFIDVDGDEWEESIDRSSTLVKECALTPEEIVAKVKNAGVVGMGGACFPTHVKLSPPPGCKAECVI
INAVECEPYLTADHRLMLEKADEVLVGVSILMKAAKVTKGYIGIENNKPDAIKLMTEKAAQYPGIEVVPLQVKYPQGGEK
QLIDAVIGRQVPAPPAIPINVGAVVQNVGTAFAVYEAVQKNKPLFERIVTVTGKSVKNPSNFLTRMGTPMSQLIDAAGGL
PEDTGKVIGGGPMMGKALVNTEVPICKGSSGVLIMNDKEAARAEAQPCIRCAKCVSVCPMGLEPFLLATLSAHKDWERVE
KEDVMSCIECGSCQFTCPSHRYLLDYIRLGKGTVGGIIRARNAKK

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. Stabilizes rnfB [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=442, Percent_Identity=36.6515837104072, Blast_Score=259, Evalue=3e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 47118; Mature: 47118

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTFRIGGVHPAENKLSAGKAIETLALPKQAVFPLSQHIGAPATAIVKKGDVVKVGTKIA
CCEEEECCCCCCCCCCCCCCHHHHHHCCHHHHCCHHHHCCCCHHHEECCCCEEEECHHHH
EAGGFVSAAIFSSVSGKVNKVDAVIDASGYRKPAIFIDVDGDEWEESIDRSSTLVKECAL
HCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC
TPEEIVAKVKNAGVVGMGGACFPTHVKLSPPPGCKAECVIINAVECEPYLTADHRLMLEK
CHHHHHHHHHCCCEEECCCCCCCCEEEECCCCCCCEEEEEEEEEECCCEECCCHHHHHHH
ADEVLVGVSILMKAAKVTKGYIGIENNKPDAIKLMTEKAAQYPGIEVVPLQVKYPQGGEK
HHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCHH
QLIDAVIGRQVPAPPAIPINVGAVVQNVGTAFAVYEAVQKNKPLFERIVTVTGKSVKNPS
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHH
NFLTRMGTPMSQLIDAAGGLPEDTGKVIGGGPMMGKALVNTEVPICKGSSGVLIMNDKEA
HHHHHCCCCHHHHHHHHCCCCCCCCCEEECCCCCCHHHCCCCCCEEECCCCEEEECCCHH
ARAEAQPCIRCAKCVSVCPMGLEPFLLATLSAHKDWERVEKEDVMSCIECGSCQFTCPSH
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEEEECCCH
RYLLDYIRLGKGTVGGIIRARNAKK
HHHHHHHHHCCCCCCCEEECCCCCC
>Mature Secondary Structure
MKTFRIGGVHPAENKLSAGKAIETLALPKQAVFPLSQHIGAPATAIVKKGDVVKVGTKIA
CCEEEECCCCCCCCCCCCCCHHHHHHCCHHHHCCHHHHCCCCHHHEECCCCEEEECHHHH
EAGGFVSAAIFSSVSGKVNKVDAVIDASGYRKPAIFIDVDGDEWEESIDRSSTLVKECAL
HCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC
TPEEIVAKVKNAGVVGMGGACFPTHVKLSPPPGCKAECVIINAVECEPYLTADHRLMLEK
CHHHHHHHHHCCCEEECCCCCCCCEEEECCCCCCCEEEEEEEEEECCCEECCCHHHHHHH
ADEVLVGVSILMKAAKVTKGYIGIENNKPDAIKLMTEKAAQYPGIEVVPLQVKYPQGGEK
HHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCHH
QLIDAVIGRQVPAPPAIPINVGAVVQNVGTAFAVYEAVQKNKPLFERIVTVTGKSVKNPS
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHH
NFLTRMGTPMSQLIDAAGGLPEDTGKVIGGGPMMGKALVNTEVPICKGSSGVLIMNDKEA
HHHHHCCCCHHHHHHHHCCCCCCCCCEEECCCCCCHHHCCCCCCEEECCCCEEEECCCHH
ARAEAQPCIRCAKCVSVCPMGLEPFLLATLSAHKDWERVEKEDVMSCIECGSCQFTCPSH
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEEEECCCH
RYLLDYIRLGKGTVGGIIRARNAKK
HHHHHHHHHCCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8264535; 9492268; 9154934 [H]