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The map label for this gene is rnfB [H]

Identifier: 150006371

GI number: 150006371

Start: 4795149

End: 4796102

Strand: Reverse

Name: rnfB [H]

Synonym: BVU_3890

Alternate gene names: 150006371

Gene position: 4796102-4795149 (Counterclockwise)

Preceding gene: 150006372

Following gene: 150006370

Centisome position: 92.89

GC content: 49.69

Gene sequence:

>954_bases
ATGGATTTAATTCTGGTTGCAGTAATTTCGTTGGGAGCGATTGGCTTGATTGCCGCGGTAATCTTGTATGCCGCTTCTAA
GAAGTTTGCTGTGTATGAAGATCCGCGGATTGCCAAGGTGAGCGAAGTGCTTCCTCAGGCGAATTGCGGTGGATGTGGTT
ATCCCGGTTGCTCTGGTTTTGCCGGTGCCTGCGTGAAGGCTGCCGATGCCGGTTCGCTGGAGGGTAAGTTATGTCCGGTT
GGTGGTGCTCCGGTAATGGAGAAAGTAGCTGCCATTTTGGGATTGGAAGCCGTTGCTGCTGAACCGAAAGTTGCGGTGGT
AAGATGTAACGGTAGTTGTGAAAATCGCCCTCGTACTGCTCTGTACGACGGAGCTAAATCGTGTGCCATCGCTCATGCCA
CTTCAGGTGGTGAGACGGGTTGTACATTCGGTTGTCTGGGTTGTGGTGATTGTGTGGAAGCGTGTCAGTTTGATGCTATT
CACATGAATCCTGAAACCGGTCTTCCGGAAGTGGACGAAGAAAAATGTACAGCTTGTGGGGCTTGCAGCAAAGCTTGTCC
GCGTAAGATCATTGAAATTCGTCCGAAAGGAAAGAACAACCGCCGCGTAGTGGTGATGTGTGTGAACAAGGATAAGGGAG
CTGTTGCCAACAAAGCTTGCAAGGCTAGTTGTATTGGTTGTGGAAAGTGTGTGAAAGTGTGTCCGTTCGAAGCCATTACG
TTGGAAAATAATTTGGCATACATTGATCCGGCTAAGTGTAAGTCTTGCCGTAAATGCGAATCGGAATGTCCGAAAGGGGC
TATCCAAGCTATCAATTTCCCGCCACGTAAACCGAAAGTAGAAGTGCCGGCTGGTGAGGCTGCTGCAAAACCTGCTGTAA
AAGTAGAGGCTTCAAAGGTGGAAACTCCGAAAGCGGAAGCGGTGAAAGCTGAGGCTCCGAAAACGGAAGCATAA

Upstream 100 bases:

>100_bases
ATTACCTTATTATATATGTATGCAGGAATAAGTTGAGCAAGAAGTTTTCATTTACGCTTGAACCAATAAAAAATAATTAA
TAAATAACTAACTAAAATTT

Downstream 100 bases:

>100_bases
TCAAAATTCAAAGTAAGTAAAAATTAAAAAGATATAACAGTGAAGACATTTAGAATTGGTGGAGTACATCCAGCAGAAAA
TAAATTGTCAGCAGGCAAAG

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MDLILVAVISLGAIGLIAAVILYAASKKFAVYEDPRIAKVSEVLPQANCGGCGYPGCSGFAGACVKAADAGSLEGKLCPV
GGAPVMEKVAAILGLEAVAAEPKVAVVRCNGSCENRPRTALYDGAKSCAIAHATSGGETGCTFGCLGCGDCVEACQFDAI
HMNPETGLPEVDEEKCTACGACSKACPRKIIEIRPKGKNNRRVVVMCVNKDKGAVANKACKASCIGCGKCVKVCPFEAIT
LENNLAYIDPAKCKSCRKCESECPKGAIQAINFPPRKPKVEVPAGEAAAKPAVKVEASKVETPKAEAVKAEAPKTEA

Sequences:

>Translated_317_residues
MDLILVAVISLGAIGLIAAVILYAASKKFAVYEDPRIAKVSEVLPQANCGGCGYPGCSGFAGACVKAADAGSLEGKLCPV
GGAPVMEKVAAILGLEAVAAEPKVAVVRCNGSCENRPRTALYDGAKSCAIAHATSGGETGCTFGCLGCGDCVEACQFDAI
HMNPETGLPEVDEEKCTACGACSKACPRKIIEIRPKGKNNRRVVVMCVNKDKGAVANKACKASCIGCGKCVKVCPFEAIT
LENNLAYIDPAKCKSCRKCESECPKGAIQAINFPPRKPKVEVPAGEAAAKPAVKVEASKVETPKAEAVKAEAPKTEA
>Mature_317_residues
MDLILVAVISLGAIGLIAAVILYAASKKFAVYEDPRIAKVSEVLPQANCGGCGYPGCSGFAGACVKAADAGSLEGKLCPV
GGAPVMEKVAAILGLEAVAAEPKVAVVRCNGSCENRPRTALYDGAKSCAIAHATSGGETGCTFGCLGCGDCVEACQFDAI
HMNPETGLPEVDEEKCTACGACSKACPRKIIEIRPKGKNNRRVVVMCVNKDKGAVANKACKASCIGCGKCVKVCPFEAIT
LENNLAYIDPAKCKSCRKCESECPKGAIQAINFPPRKPKVEVPAGEAAAKPAVKVEASKVETPKAEAVKAEAPKTEA

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=195, Percent_Identity=31.2820512820513, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 32596; Mature: 32596

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
9.8 %Cys+Met (Translated Protein)
8.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
9.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLILVAVISLGAIGLIAAVILYAASKKFAVYEDPRIAKVSEVLPQANCGGCGYPGCSGF
CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCH
AGACVKAADAGSLEGKLCPVGGAPVMEKVAAILGLEAVAAEPKVAVVRCNGSCENRPRTA
HHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHH
LYDGAKSCAIAHATSGGETGCTFGCLGCGDCVEACQFDAIHMNPETGLPEVDEEKCTACG
HHCCCCCEEEEECCCCCCCCCEEECCCHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHH
ACSKACPRKIIEIRPKGKNNRRVVVMCVNKDKGAVANKACKASCIGCGKCVKVCPFEAIT
HHHHHCCHHHEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHCCCEEEE
LENNLAYIDPAKCKSCRKCESECPKGAIQAINFPPRKPKVEVPAGEAAAKPAVKVEASKV
ECCCEEEECHHHHHHHHHHHHHCCCCHHEECCCCCCCCEEECCCCCHHCCCCEEEEHHHC
ETPKAEAVKAEAPKTEA
CCCHHHHEECCCCCCCC
>Mature Secondary Structure
MDLILVAVISLGAIGLIAAVILYAASKKFAVYEDPRIAKVSEVLPQANCGGCGYPGCSGF
CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCH
AGACVKAADAGSLEGKLCPVGGAPVMEKVAAILGLEAVAAEPKVAVVRCNGSCENRPRTA
HHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHH
LYDGAKSCAIAHATSGGETGCTFGCLGCGDCVEACQFDAIHMNPETGLPEVDEEKCTACG
HHCCCCCEEEEECCCCCCCCCEEECCCHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHH
ACSKACPRKIIEIRPKGKNNRRVVVMCVNKDKGAVANKACKASCIGCGKCVKVCPFEAIT
HHHHHCCHHHEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHCCCEEEE
LENNLAYIDPAKCKSCRKCESECPKGAIQAINFPPRKPKVEVPAGEAAAKPAVKVEASKV
ECCCEEEECHHHHHHHHHHHHHCCCCHHEECCCCCCCCEEECCCCCHHCCCCEEEEHHHC
ETPKAEAVKAEAPKTEA
CCCHHHHEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA