Click here to switch to the map view.

The map label for this gene is rnfD [H]

Identifier: 150006369

GI number: 150006369

Start: 4792768

End: 4793757

Strand: Reverse

Name: rnfD [H]

Synonym: BVU_3888

Alternate gene names: 150006369

Gene position: 4793757-4792768 (Counterclockwise)

Preceding gene: 150006370

Following gene: 150006368

Centisome position: 92.84

GC content: 44.75

Gene sequence:

>990_bases
ATGGCTAATAAATTAATAGTATCATTATCGCCTCACGTTCATAGCGGTGACAGCATACAGAAGAATATGTATGGTGTACT
CATTGCGTTGATACCTGCGTTGCTGGTGTCATTTTATATGTTCGGACTGGGCGCCGTGGTGGTGACCTTGACCTCGGTTG
CCGCCTGTGTATTCTTCGAATGGGCGATTACCAAGTTTATTTTGAAGAGAGAACGCTCTACCATCTGTGATGGTTCGGCT
ATTATAACCGGTGTGTTGCTGGCATTCAATCTGCCTTCCAACTTGCCGCTTTGGATTATTATCATCGGTGCGTTGGTGGC
AATCGGTGTGGGCAAGATGACTTTCGGCGGATTGGGTTGTAATCCTTTCAATCCCGCGCTGGTAGGTCGTATCTTCCTGC
TGATTTCTTTTCCTGTGCAGATGACTTCATGGCCGTTGGTTCAACAATGGGGAAGTTATACCGATGCTGAAACCGGTGCT
ACTCCGCTGGCATTGATGAAAATGGCTGTAAAGGGTGATGCAAATGCTTTAGGTCAGTTGCCCGATACATTAAGTCTATT
TCTGGGTAATAACCCGGGTTCACTAGGTGAGGTGAGTGCATTGGCTTTATTGCTTGGTCTGGGATATATGCTATGGAAAA
AGATTATTTCCTGGCATATTCCTGTATCTATTCTGGTGACAGTATTTGTATTTGCCGGGCTGATGCATTTGGTTGATCCG
GTTGCTTACGCATCTCCGTTGGCTCACTTGTTTACAGGTGGTTTGATGTTGGGAGCTATTTTCATGGCAACCGACTATGT
TACTTCGCCTATGACTCATAAAGGTATGATTATTTACGGTGTGGCTATCGGTTTCCTGACGGTGGTTATCCGTTTGTTCG
GTGCATATCCCGAAGGTATGTCTTTCGCTATATTCATTATGAACGCATTCACTCCGTTAATCAATACTTATTGTAAACCT
AAAAGATTCGGGGAGGTCGTGAAGAAATGA

Upstream 100 bases:

>100_bases
CGTCTCATCGTTATTTGCTGGACTATATCCGTTTGGGTAAGGGCACAGTAGGCGGTATCATCCGTGCACGTAATGCTAAA
AAATAATTCGACAAAATAGT

Downstream 100 bases:

>100_bases
AAAAACTAGAATCATCTTTGAAAAACATGGTTATCGTGCTGACAGGCGTAACCGTGGTAGCCGGAGCATTGCTGGGTTAT
GTGAATGAGTTGACAAAGGA

Product: Na+-transporting NADH:ubiquinone oxidoreductase, electron transport complex protein rnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MANKLIVSLSPHVHSGDSIQKNMYGVLIALIPALLVSFYMFGLGAVVVTLTSVAACVFFEWAITKFILKRERSTICDGSA
IITGVLLAFNLPSNLPLWIIIIGALVAIGVGKMTFGGLGCNPFNPALVGRIFLLISFPVQMTSWPLVQQWGSYTDAETGA
TPLALMKMAVKGDANALGQLPDTLSLFLGNNPGSLGEVSALALLLGLGYMLWKKIISWHIPVSILVTVFVFAGLMHLVDP
VAYASPLAHLFTGGLMLGAIFMATDYVTSPMTHKGMIIYGVAIGFLTVVIRLFGAYPEGMSFAIFIMNAFTPLINTYCKP
KRFGEVVKK

Sequences:

>Translated_329_residues
MANKLIVSLSPHVHSGDSIQKNMYGVLIALIPALLVSFYMFGLGAVVVTLTSVAACVFFEWAITKFILKRERSTICDGSA
IITGVLLAFNLPSNLPLWIIIIGALVAIGVGKMTFGGLGCNPFNPALVGRIFLLISFPVQMTSWPLVQQWGSYTDAETGA
TPLALMKMAVKGDANALGQLPDTLSLFLGNNPGSLGEVSALALLLGLGYMLWKKIISWHIPVSILVTVFVFAGLMHLVDP
VAYASPLAHLFTGGLMLGAIFMATDYVTSPMTHKGMIIYGVAIGFLTVVIRLFGAYPEGMSFAIFIMNAFTPLINTYCKP
KRFGEVVKK
>Mature_328_residues
ANKLIVSLSPHVHSGDSIQKNMYGVLIALIPALLVSFYMFGLGAVVVTLTSVAACVFFEWAITKFILKRERSTICDGSAI
ITGVLLAFNLPSNLPLWIIIIGALVAIGVGKMTFGGLGCNPFNPALVGRIFLLISFPVQMTSWPLVQQWGSYTDAETGAT
PLALMKMAVKGDANALGQLPDTLSLFLGNNPGSLGEVSALALLLGLGYMLWKKIISWHIPVSILVTVFVFAGLMHLVDPV
AYASPLAHLFTGGLMLGAIFMATDYVTSPMTHKGMIIYGVAIGFLTVVIRLFGAYPEGMSFAIFIMNAFTPLINTYCKPK
RFGEVVKK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=349, Percent_Identity=34.6704871060172, Blast_Score=200, Evalue=8e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 35341; Mature: 35210

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANKLIVSLSPHVHSGDSIQKNMYGVLIALIPALLVSFYMFGLGAVVVTLTSVAACVFFE
CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WAITKFILKRERSTICDGSAIITGVLLAFNLPSNLPLWIIIIGALVAIGVGKMTFGGLGC
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCC
NPFNPALVGRIFLLISFPVQMTSWPLVQQWGSYTDAETGATPLALMKMAVKGDANALGQL
CCCCHHHHHHHHHHHHCCHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHCC
PDTLSLFLGNNPGSLGEVSALALLLGLGYMLWKKIISWHIPVSILVTVFVFAGLMHLVDP
CHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
VAYASPLAHLFTGGLMLGAIFMATDYVTSPMTHKGMIIYGVAIGFLTVVIRLFGAYPEGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
SFAIFIMNAFTPLINTYCKPKRFGEVVKK
HHHHHHHHHHHHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure 
ANKLIVSLSPHVHSGDSIQKNMYGVLIALIPALLVSFYMFGLGAVVVTLTSVAACVFFE
CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WAITKFILKRERSTICDGSAIITGVLLAFNLPSNLPLWIIIIGALVAIGVGKMTFGGLGC
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCC
NPFNPALVGRIFLLISFPVQMTSWPLVQQWGSYTDAETGATPLALMKMAVKGDANALGQL
CCCCHHHHHHHHHHHHCCHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHCC
PDTLSLFLGNNPGSLGEVSALALLLGLGYMLWKKIISWHIPVSILVTVFVFAGLMHLVDP
CHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
VAYASPLAHLFTGGLMLGAIFMATDYVTSPMTHKGMIIYGVAIGFLTVVIRLFGAYPEGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
SFAIFIMNAFTPLINTYCKPKRFGEVVKK
HHHHHHHHHHHHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA