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The map label for this gene is 150004546

Identifier: 150004546

GI number: 150004546

Start: 2582661

End: 2584670

Strand: Reverse

Name: 150004546

Synonym: BVU_1996

Alternate gene names: NA

Gene position: 2584670-2582661 (Counterclockwise)

Preceding gene: 150004555

Following gene: 150004545

Centisome position: 50.06

GC content: 39.6

Gene sequence:

>2010_bases
ATGGACAAAATGCAAGTAGACACCCATAATAAAGAGTTTCAAGATGCCTTGAACCTTATCCAATATACACGTCAGTCAGT
ATTCCTCACTGGAAAGGCGGGTACAGGTAAATCTACTTTTCTAAAATATGTTTGCGAAGTAACCAAAAAGAAACATATAG
TACTGGCTCCCACAGGTATTGCAGCTATCAATGCCGGCGGAAGCACACTGCATAGTTTTTTCAAATTACCATTCTATCCA
CTTTTACCGGATGATCCTAAATTCAGTTTGAAAGATGGAAAGTTACATAGCTTTCTAAAATATACTTCCGCTCATCGAAA
ACTGATAAAAGAAGTAGAATTAGTGATCATCGATGAAATTTCCATGGTTCGGGCAGACATTATTGACTTTATAGACAAAA
TATTGCGGGTATATTCACAAAATATGCGTGAACCATTCGGAGGCAAGCAAATATTGCTGGTAGGAGATGTTTTTCAACTT
GAACCAGTCATTAAAAATGACGAACGTGAGATAATCAACCGCTTCTATCCCACCCCTTATTTCTTTTCGGCACGGGTCTT
TCAGGAAATGGAGCTGGTATCCATAGAACTGACAAAAGTATACCGCCAGTCGGACAAAATTTTTGTTAACGTATTGGATC
ATATCCGGACCAATACTGCCGGAGCAGCCGACTTGCAACTACTGAACACCCGTTACAACACTCACATAGAAGAAAATGAA
AGTGATATGTATATCACACTTGCTACCCGGAGAGACACCGTAGACTTTATCAATGAAAAGAAATTATCTGAACTACCTGG
AGAATCAACGATTCTGACCGGTGAGATACACGGAGAATTTCCAGAAAGCAGCCTTCCCACCCAAATGGAACTGGAAGTAA
AACCAGGAGCACAAATTATTTTTATAAAAAACGATTACGACCACCGTTGGGTGAACGGTACGATTGGCACCATTTCAGGT
ATAGACGAAGGGGATACATTATATGTTATCACAGAAGACGGACAGGAATTTGACGTTAAAAAAGACAGTTGGCGCAATAT
ACGATATAAATATAATGAACTAGAAAAAAAAATAGAAGAAGAAGAATTAGGAGTATTTATACAATATCCTATCCGTTTGG
CATGGGCCATCACGATACACAAAAGCCAAGGATTGACTTTCAGCAGGGTCGTTATTGATTTTACAGGAGGGGTGTTTGCC
GGTGGACAAGCCTACGTAGCATTGAGCCGCTGTACTTCACTAGACGGCATCCAACTAAAAAAGCAAATTACACGTGGAGA
TATCTTTGTCCGCCCGGAAATAGTAAAGTTCTCGCAACGATTCAATAACCGCCAGTCCATTGAAAAAGCATTGAAGCAGG
CACAAGCTGATGTACAATATGTAGAAGCGGTACAACACTTCGACAAAGGTGATTTTGAAAGATTTCTAGAACAATTCTTT
CTTGCCATCCATTCACGTTATGATATCGAAAAGCCTTTGATCAAAAGATTTATACGTAAGAAGCTGGGAATCATCAACAA
TTTGAAAGTCGAAAACAAACGGCTAAAAGACCAATTCCATGTACAACGCAAAAATCTTGAAAAATATGCCCGCGAATATT
ATTTAATGGGAAATGAATGTATCATCCAGGCACATGATTCACGTGCTGCTATTGCCAATTATGACAAAGCGATTGAATTG
AATCCTTCTTATACGGACGCTTGGATACGTAAAGGTATCACATTACATAATGACAAGGAATACTACGAAGCCGAAGTTTG
TCTGAATGAAGCGGTACGCCTTAGTCCCGCTTTATTCAAAGCTATTTACAATCGAGGAAAAAACAGACTGGCATTAGATA
ATATAGAAGGAGCTTTGGGAGATTTTGACCGGGCTGTTTCTTTAAAGCCGGAACATCCGAAGGCCCATGAATATTTCGGA
GACGCATTGATGAGAATCGGAAAAGAAGAGGAAGCCGCCCTACAATGGGCTATTGCGGAACGCTTGCGTGAAAAAAAATC
TAAAAATTAA

Upstream 100 bases:

>100_bases
CAACCCCCTGTAGGACTATAAAAAAGGACGGTTATTTAACCGTCTTTTTTATGCCCTTTTACGGGATTTCCACTATCTTT
GTCCATTCATTTTCAAACGT

Downstream 100 bases:

>100_bases
AATAACATGCTTTTAAGACTTTATAATAAGAATAATAATCCCAAAGATCTGGAAGAAGTAATCCGGATATTGGAAGAGGG
AGGGTTAATTATTTACCCTA

Product: putative helicase

Products: NA

Alternate protein names: Helicase; TPR Domain Protein; TPR Domain-Containing Protein; TPR Repeat-Containing Protein; Tetratricopeptide Repeat Domain Protein; ATPase; Exonuclease V Subunit Alpha; Tetratricopeptide Repeat Family; Helicase-Related Protein; 5-3' DNA Helicase; Aaa ATPase; Glycosysltransferase; Hrdc Domain Protein; HRDC Domain Protein; Helicase-Family Protein; RecD-Like Exodeoxyribonuclease V Alpha Chain; RRM3/PIF1 Helicase-Like Protein; Helicase Protein; ATP-Dependent ExoDNAse Alpha Subunit; DNA Helicase AAA ATPase; DNA Helicase/AAA ATPase; Tetratricopeptide Repeat Domain-Containing Protein; Tetratricopeptide Repeat-Containing Protein; Helicase RecD/TraA Family

Number of amino acids: Translated: 669; Mature: 669

Protein sequence:

>669_residues
MDKMQVDTHNKEFQDALNLIQYTRQSVFLTGKAGTGKSTFLKYVCEVTKKKHIVLAPTGIAAINAGGSTLHSFFKLPFYP
LLPDDPKFSLKDGKLHSFLKYTSAHRKLIKEVELVIIDEISMVRADIIDFIDKILRVYSQNMREPFGGKQILLVGDVFQL
EPVIKNDEREIINRFYPTPYFFSARVFQEMELVSIELTKVYRQSDKIFVNVLDHIRTNTAGAADLQLLNTRYNTHIEENE
SDMYITLATRRDTVDFINEKKLSELPGESTILTGEIHGEFPESSLPTQMELEVKPGAQIIFIKNDYDHRWVNGTIGTISG
IDEGDTLYVITEDGQEFDVKKDSWRNIRYKYNELEKKIEEEELGVFIQYPIRLAWAITIHKSQGLTFSRVVIDFTGGVFA
GGQAYVALSRCTSLDGIQLKKQITRGDIFVRPEIVKFSQRFNNRQSIEKALKQAQADVQYVEAVQHFDKGDFERFLEQFF
LAIHSRYDIEKPLIKRFIRKKLGIINNLKVENKRLKDQFHVQRKNLEKYAREYYLMGNECIIQAHDSRAAIANYDKAIEL
NPSYTDAWIRKGITLHNDKEYYEAEVCLNEAVRLSPALFKAIYNRGKNRLALDNIEGALGDFDRAVSLKPEHPKAHEYFG
DALMRIGKEEEAALQWAIAERLREKKSKN

Sequences:

>Translated_669_residues
MDKMQVDTHNKEFQDALNLIQYTRQSVFLTGKAGTGKSTFLKYVCEVTKKKHIVLAPTGIAAINAGGSTLHSFFKLPFYP
LLPDDPKFSLKDGKLHSFLKYTSAHRKLIKEVELVIIDEISMVRADIIDFIDKILRVYSQNMREPFGGKQILLVGDVFQL
EPVIKNDEREIINRFYPTPYFFSARVFQEMELVSIELTKVYRQSDKIFVNVLDHIRTNTAGAADLQLLNTRYNTHIEENE
SDMYITLATRRDTVDFINEKKLSELPGESTILTGEIHGEFPESSLPTQMELEVKPGAQIIFIKNDYDHRWVNGTIGTISG
IDEGDTLYVITEDGQEFDVKKDSWRNIRYKYNELEKKIEEEELGVFIQYPIRLAWAITIHKSQGLTFSRVVIDFTGGVFA
GGQAYVALSRCTSLDGIQLKKQITRGDIFVRPEIVKFSQRFNNRQSIEKALKQAQADVQYVEAVQHFDKGDFERFLEQFF
LAIHSRYDIEKPLIKRFIRKKLGIINNLKVENKRLKDQFHVQRKNLEKYAREYYLMGNECIIQAHDSRAAIANYDKAIEL
NPSYTDAWIRKGITLHNDKEYYEAEVCLNEAVRLSPALFKAIYNRGKNRLALDNIEGALGDFDRAVSLKPEHPKAHEYFG
DALMRIGKEEEAALQWAIAERLREKKSKN
>Mature_669_residues
MDKMQVDTHNKEFQDALNLIQYTRQSVFLTGKAGTGKSTFLKYVCEVTKKKHIVLAPTGIAAINAGGSTLHSFFKLPFYP
LLPDDPKFSLKDGKLHSFLKYTSAHRKLIKEVELVIIDEISMVRADIIDFIDKILRVYSQNMREPFGGKQILLVGDVFQL
EPVIKNDEREIINRFYPTPYFFSARVFQEMELVSIELTKVYRQSDKIFVNVLDHIRTNTAGAADLQLLNTRYNTHIEENE
SDMYITLATRRDTVDFINEKKLSELPGESTILTGEIHGEFPESSLPTQMELEVKPGAQIIFIKNDYDHRWVNGTIGTISG
IDEGDTLYVITEDGQEFDVKKDSWRNIRYKYNELEKKIEEEELGVFIQYPIRLAWAITIHKSQGLTFSRVVIDFTGGVFA
GGQAYVALSRCTSLDGIQLKKQITRGDIFVRPEIVKFSQRFNNRQSIEKALKQAQADVQYVEAVQHFDKGDFERFLEQFF
LAIHSRYDIEKPLIKRFIRKKLGIINNLKVENKRLKDQFHVQRKNLEKYAREYYLMGNECIIQAHDSRAAIANYDKAIEL
NPSYTDAWIRKGITLHNDKEYYEAEVCLNEAVRLSPALFKAIYNRGKNRLALDNIEGALGDFDRAVSLKPEHPKAHEYFG
DALMRIGKEEEAALQWAIAERLREKKSKN

Specific function: Unknown

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI82546872, Length=408, Percent_Identity=32.1078431372549, Blast_Score=187, Evalue=2e-47,
Organism=Caenorhabditis elegans, GI25143421, Length=415, Percent_Identity=30.8433734939759, Blast_Score=156, Evalue=4e-38,
Organism=Saccharomyces cerevisiae, GI6321820, Length=492, Percent_Identity=28.0487804878049, Blast_Score=156, Evalue=1e-38,
Organism=Saccharomyces cerevisiae, GI6323579, Length=340, Percent_Identity=29.7058823529412, Blast_Score=126, Evalue=1e-29,
Organism=Drosophila melanogaster, GI19920652, Length=430, Percent_Identity=30.6976744186047, Blast_Score=170, Evalue=3e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 77204; Mature: 77204

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKMQVDTHNKEFQDALNLIQYTRQSVFLTGKAGTGKSTFLKYVCEVTKKKHIVLAPTGI
CCCCCCCCCCHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCE
AAINAGGSTLHSFFKLPFYPLLPDDPKFSLKDGKLHSFLKYTSAHRKLIKEVELVIIDEI
EEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECHH
SMVRADIIDFIDKILRVYSQNMREPFGGKQILLVGDVFQLEPVIKNDEREIINRFYPTPY
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHEECCCCCCCHHHHHHHHCCCCC
FFSARVFQEMELVSIELTKVYRQSDKIFVNVLDHIRTNTAGAADLQLLNTRYNTHIEENE
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHEECCHHCCCCCCCC
SDMYITLATRRDTVDFINEKKLSELPGESTILTGEIHGEFPESSLPTQMELEVKPGAQII
CCEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCEEE
FIKNDYDHRWVNGTIGTISGIDEGDTLYVITEDGQEFDVKKDSWRNIRYKYNELEKKIEE
EEECCCCCCEECCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
EELGVFIQYPIRLAWAITIHKSQGLTFSRVVIDFTGGVFAGGQAYVALSRCTSLDGIQLK
HHCCEEEEECEEEEEEEEEECCCCCEEEEEEEEECCCEEECCHHEEEEEHHCCCCCHHHH
KQITRGDIFVRPEIVKFSQRFNNRQSIEKALKQAQADVQYVEAVQHFDKGDFERFLEQFF
HHHCCCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LAIHSRYDIEKPLIKRFIRKKLGIINNLKVENKRLKDQFHVQRKNLEKYAREYYLMGNEC
HHHHHCCCCCHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHEEECCEE
IIQAHDSRAAIANYDKAIELNPSYTDAWIRKGITLHNDKEYYEAEVCLNEAVRLSPALFK
EEEECCCCCHHCCCCCEEEECCCHHHHHHHCCCEECCCHHHHHHHHHHHHHHHCCHHHHH
AIYNRGKNRLALDNIEGALGDFDRAVSLKPEHPKAHEYFGDALMRIGKEEEAALQWAIAE
HHHHCCCCEEEECCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
RLREKKSKN
HHHHHHCCC
>Mature Secondary Structure
MDKMQVDTHNKEFQDALNLIQYTRQSVFLTGKAGTGKSTFLKYVCEVTKKKHIVLAPTGI
CCCCCCCCCCHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCE
AAINAGGSTLHSFFKLPFYPLLPDDPKFSLKDGKLHSFLKYTSAHRKLIKEVELVIIDEI
EEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECHH
SMVRADIIDFIDKILRVYSQNMREPFGGKQILLVGDVFQLEPVIKNDEREIINRFYPTPY
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHEECCCCCCCHHHHHHHHCCCCC
FFSARVFQEMELVSIELTKVYRQSDKIFVNVLDHIRTNTAGAADLQLLNTRYNTHIEENE
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHEECCHHCCCCCCCC
SDMYITLATRRDTVDFINEKKLSELPGESTILTGEIHGEFPESSLPTQMELEVKPGAQII
CCEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCEEE
FIKNDYDHRWVNGTIGTISGIDEGDTLYVITEDGQEFDVKKDSWRNIRYKYNELEKKIEE
EEECCCCCCEECCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
EELGVFIQYPIRLAWAITIHKSQGLTFSRVVIDFTGGVFAGGQAYVALSRCTSLDGIQLK
HHCCEEEEECEEEEEEEEEECCCCCEEEEEEEEECCCEEECCHHEEEEEHHCCCCCHHHH
KQITRGDIFVRPEIVKFSQRFNNRQSIEKALKQAQADVQYVEAVQHFDKGDFERFLEQFF
HHHCCCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LAIHSRYDIEKPLIKRFIRKKLGIINNLKVENKRLKDQFHVQRKNLEKYAREYYLMGNEC
HHHHHCCCCCHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHEEECCEE
IIQAHDSRAAIANYDKAIELNPSYTDAWIRKGITLHNDKEYYEAEVCLNEAVRLSPALFK
EEEECCCCCHHCCCCCEEEECCCHHHHHHHCCCEECCCHHHHHHHHHHHHHHHCCHHHHH
AIYNRGKNRLALDNIEGALGDFDRAVSLKPEHPKAHEYFGDALMRIGKEEEAALQWAIAE
HHHHCCCCEEEECCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
RLREKKSKN
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA