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The map label for this gene is yciO [H]

Identifier: 150004545

GI number: 150004545

Start: 2582040

End: 2582654

Strand: Reverse

Name: yciO [H]

Synonym: BVU_1995

Alternate gene names: 150004545

Gene position: 2582654-2582040 (Counterclockwise)

Preceding gene: 150004546

Following gene: 150004544

Centisome position: 50.02

GC content: 38.37

Gene sequence:

>615_bases
ATGCTTTTAAGACTTTATAATAAGAATAATAATCCCAAAGATCTGGAAGAAGTAATCCGGATATTGGAAGAGGGAGGGTT
AATTATTTACCCTACCGATACGATGTATGCCATAGGATGTCATGGTCTGAAAGAACGTGCAATAGAACGTATCTGCAAAC
TGAAAAACATTGATCCACGTAAAAACAATTTATCCATTATCTGTTACGACTTAAGCAATATCAGCGAATATGCCAAAGTA
GACAACAGCACATTCAAGCTAATGAAACGCAATCTTCCCGGACCGTTCACTTTTATCCTGAATACGGGAAACCGTCTGCC
CAAAATATTCAAGAACCGTAAAGAAGTAGGTATACGCGTACCAGACAACAACATCATCAGGGAAATATGCCATATACTAA
AAGCACCAATCATGACCACCACGTTGCCTCTGAAAGACGGCGAAGACATAGAATATATTACCACTCCAGAACTGATAGAA
GAAAAATTCGGCAAAGAGGTAGAACTAATTATTGATGGAGGTATCGGAAGCATAGAACCTTCTACCATTGTGAACTGTAC
AAACGGAGAAGCAGAAATTGTACGTCAAGGTAAAGGTATTCTGAACGATTTTTAA

Upstream 100 bases:

>100_bases
CGGAGACGCATTGATGAGAATCGGAAAAGAAGAGGAAGCCGCCCTACAATGGGCTATTGCGGAACGCTTGCGTGAAAAAA
AATCTAAAAATTAAAATAAC

Downstream 100 bases:

>100_bases
TCTGAATTGTTTTATATATTAGAAATGTCAAATTAAAGTAAATTTATCATGTTATTAGCATCTGAAACAAGTATTCAATT
AACCAATGCATTAGAGAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MLLRLYNKNNNPKDLEEVIRILEEGGLIIYPTDTMYAIGCHGLKERAIERICKLKNIDPRKNNLSIICYDLSNISEYAKV
DNSTFKLMKRNLPGPFTFILNTGNRLPKIFKNRKEVGIRVPDNNIIREICHILKAPIMTTTLPLKDGEDIEYITTPELIE
EKFGKEVELIIDGGIGSIEPSTIVNCTNGEAEIVRQGKGILNDF

Sequences:

>Translated_204_residues
MLLRLYNKNNNPKDLEEVIRILEEGGLIIYPTDTMYAIGCHGLKERAIERICKLKNIDPRKNNLSIICYDLSNISEYAKV
DNSTFKLMKRNLPGPFTFILNTGNRLPKIFKNRKEVGIRVPDNNIIREICHILKAPIMTTTLPLKDGEDIEYITTPELIE
EKFGKEVELIIDGGIGSIEPSTIVNCTNGEAEIVRQGKGILNDF
>Mature_204_residues
MLLRLYNKNNNPKDLEEVIRILEEGGLIIYPTDTMYAIGCHGLKERAIERICKLKNIDPRKNNLSIICYDLSNISEYAKV
DNSTFKLMKRNLPGPFTFILNTGNRLPKIFKNRKEVGIRVPDNNIIREICHILKAPIMTTTLPLKDGEDIEYITTPELIE
EKFGKEVELIIDGGIGSIEPSTIVNCTNGEAEIVRQGKGILNDF

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=204, Percent_Identity=37.2549019607843, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI2367210, Length=197, Percent_Identity=24.3654822335025, Blast_Score=67, Evalue=9e-13,
Organism=Drosophila melanogaster, GI78707274, Length=185, Percent_Identity=27.027027027027, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23132; Mature: 23132

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLRLYNKNNNPKDLEEVIRILEEGGLIIYPTDTMYAIGCHGLKERAIERICKLKNIDPR
CEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCEEEECCCCHHHHHHHHHHHHCCCCCC
KNNLSIICYDLSNISEYAKVDNSTFKLMKRNLPGPFTFILNTGNRLPKIFKNRKEVGIRV
CCCCEEEEEECCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCHHHHCCHHHCEEEC
PDNNIIREICHILKAPIMTTTLPLKDGEDIEYITTPELIEEKFGKEVELIIDGGIGSIEP
CCCHHHHHHHHHHHCCHHEEEECCCCCCCCEEECCHHHHHHHCCCEEEEEEECCCCCCCC
STIVNCTNGEAEIVRQGKGILNDF
CCEEEECCCHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLLRLYNKNNNPKDLEEVIRILEEGGLIIYPTDTMYAIGCHGLKERAIERICKLKNIDPR
CEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCEEEECCCCHHHHHHHHHHHHCCCCCC
KNNLSIICYDLSNISEYAKVDNSTFKLMKRNLPGPFTFILNTGNRLPKIFKNRKEVGIRV
CCCCEEEEEECCCHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCHHHHCCHHHCEEEC
PDNNIIREICHILKAPIMTTTLPLKDGEDIEYITTPELIEEKFGKEVELIIDGGIGSIEP
CCCHHHHHHHHHHHCCHHEEEECCCCCCCCEEECCHHHHHHHCCCEEEEEEECCCCCCCC
STIVNCTNGEAEIVRQGKGILNDF
CCEEEECCCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]