Click here to switch to the map view.

The map label for this gene is rbsR [H]

Identifier: 150003420

GI number: 150003420

Start: 1147943

End: 1148836

Strand: Reverse

Name: rbsR [H]

Synonym: BVU_0845

Alternate gene names: 150003420

Gene position: 1148836-1147943 (Counterclockwise)

Preceding gene: 150003421

Following gene: 150003414

Centisome position: 22.25

GC content: 39.37

Gene sequence:

>894_bases
TTGGCAAAAGAGATGAATTATCACCCCAATCCTTTTGCTATGAGTCTCCGGAAAAATACTCCCCGTACCATTGGAGTAAT
TGTACCTGATATTGTTACTCATTTCTTTGCGTCTATTTTAAGTGGTATAGAAGATACCGCTATAGCAAACGGCTATTTTG
TTATCATCACGACTTCCCATGAGTCATACGACCATGAGAAAAGAAATATTGAGAATTTGGTCAATATGCATGTGGAAGGT
ATTATAGGTTGTTTATCTCAAGAAACAACAGATTATGCCCATTGGTTGAGTTTGGATGATATGAATATGCCGCTTGTTCT
ATTTGATCGTGTTTGCATGCCTGACCGTTTTTCTACGGTAGTGGCTGATGGAGTATATTCTGCTCAGATGGCTACACAGC
ACTTGTTGGATCATGGAAGCAAACGGATTGCTTTTATCGGTGGTGCAAACCATCTGGATATAGTAAGAAAGAGAAAACAT
GGTTACCTTGAAGCGTTAAGGGAAAATAAGATACCTATTGAGAAAGATTTGGTTGTGTGTCGGAAAATTGATTTTGAAGA
AGGGAAAATAGCTACAGAAATTTTATTATCGCTTCCGGAGCCTCCCGATGCAATTCTTGCCATGAATGATACATTGGCAT
TTGCCGCTATGGAAGTGATTAGAAATCATAATCTTCGTATTCCTCAGGATATAGCGCTTATTGGGTATACAGATGAGCAA
CATGCCAATTATGTAGTGCCTCGCCTTTCGGCCGTCTCGCATCAGACTTATAAGATGGGGGAAGCCGCATGTCAGATGTT
GATTGATAAGATTAAGGGAGATAAAAAAATCAGGCAAATCATTATTCCTACTTGTTTGCAGGTGAGGGAAAGCAGTATAA
AAAGGAAGGATTGA

Upstream 100 bases:

>100_bases
AGATTTGGCACAGATATTAGGTGTATCCATACCTACAGTATCCCGTGCCTTGAAAAATAGTCCCGAAATCAGTCGGGAAC
TTTGTATTAAAGCTCAAAAA

Downstream 100 bases:

>100_bases
GAACCGAAATGTATTTTAAGAAGAGAATAAGGCTGAACTCTTCACAAAGAGCCAACCTTATTTCTTTATATATTGGAGTA
TTATTGAGTGACCAACGTAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MAKEMNYHPNPFAMSLRKNTPRTIGVIVPDIVTHFFASILSGIEDTAIANGYFVIITTSHESYDHEKRNIENLVNMHVEG
IIGCLSQETTDYAHWLSLDDMNMPLVLFDRVCMPDRFSTVVADGVYSAQMATQHLLDHGSKRIAFIGGANHLDIVRKRKH
GYLEALRENKIPIEKDLVVCRKIDFEEGKIATEILLSLPEPPDAILAMNDTLAFAAMEVIRNHNLRIPQDIALIGYTDEQ
HANYVVPRLSAVSHQTYKMGEAACQMLIDKIKGDKKIRQIIIPTCLQVRESSIKRKD

Sequences:

>Translated_297_residues
MAKEMNYHPNPFAMSLRKNTPRTIGVIVPDIVTHFFASILSGIEDTAIANGYFVIITTSHESYDHEKRNIENLVNMHVEG
IIGCLSQETTDYAHWLSLDDMNMPLVLFDRVCMPDRFSTVVADGVYSAQMATQHLLDHGSKRIAFIGGANHLDIVRKRKH
GYLEALRENKIPIEKDLVVCRKIDFEEGKIATEILLSLPEPPDAILAMNDTLAFAAMEVIRNHNLRIPQDIALIGYTDEQ
HANYVVPRLSAVSHQTYKMGEAACQMLIDKIKGDKKIRQIIIPTCLQVRESSIKRKD
>Mature_296_residues
AKEMNYHPNPFAMSLRKNTPRTIGVIVPDIVTHFFASILSGIEDTAIANGYFVIITTSHESYDHEKRNIENLVNMHVEGI
IGCLSQETTDYAHWLSLDDMNMPLVLFDRVCMPDRFSTVVADGVYSAQMATQHLLDHGSKRIAFIGGANHLDIVRKRKHG
YLEALRENKIPIEKDLVVCRKIDFEEGKIATEILLSLPEPPDAILAMNDTLAFAAMEVIRNHNLRIPQDIALIGYTDEQH
ANYVVPRLSAVSHQTYKMGEAACQMLIDKIKGDKKIRQIIIPTCLQVRESSIKRKD

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=273, Percent_Identity=30.03663003663, Blast_Score=148, Evalue=3e-37,
Organism=Escherichia coli, GI1790194, Length=269, Percent_Identity=28.996282527881, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787948, Length=280, Percent_Identity=26.0714285714286, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1789202, Length=257, Percent_Identity=28.0155642023346, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1788474, Length=298, Percent_Identity=26.8456375838926, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1786268, Length=278, Percent_Identity=24.1007194244604, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789068, Length=259, Percent_Identity=24.7104247104247, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI48994940, Length=272, Percent_Identity=23.8970588235294, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787580, Length=293, Percent_Identity=22.8668941979522, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790715, Length=280, Percent_Identity=26.4285714285714, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787906, Length=215, Percent_Identity=25.1162790697674, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786540, Length=294, Percent_Identity=24.4897959183673, Blast_Score=78, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 33551; Mature: 33420

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKEMNYHPNPFAMSLRKNTPRTIGVIVPDIVTHFFASILSGIEDTAIANGYFVIITTSH
CCCCCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHCCCCHHEECCCEEEEEEECC
ESYDHEKRNIENLVNMHVEGIIGCLSQETTDYAHWLSLDDMNMPLVLFDRVCMPDRFSTV
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEECCCCCCHHHHHHHCCCCHHHHH
VADGVYSAQMATQHLLDHGSKRIAFIGGANHLDIVRKRKHGYLEALRENKIPIEKDLVVC
HHCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
RKIDFEEGKIATEILLSLPEPPDAILAMNDTLAFAAMEVIRNHNLRIPQDIALIGYTDEQ
HCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
HANYVVPRLSAVSHQTYKMGEAACQMLIDKIKGDKKIRQIIIPTCLQVRESSIKRKD
CCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AKEMNYHPNPFAMSLRKNTPRTIGVIVPDIVTHFFASILSGIEDTAIANGYFVIITTSH
CCCCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHCCCCHHEECCCEEEEEEECC
ESYDHEKRNIENLVNMHVEGIIGCLSQETTDYAHWLSLDDMNMPLVLFDRVCMPDRFSTV
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEECCCCCCHHHHHHHCCCCHHHHH
VADGVYSAQMATQHLLDHGSKRIAFIGGANHLDIVRKRKHGYLEALRENKIPIEKDLVVC
HHCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
RKIDFEEGKIATEILLSLPEPPDAILAMNDTLAFAAMEVIRNHNLRIPQDIALIGYTDEQ
HCCCCCCCHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
HANYVVPRLSAVSHQTYKMGEAACQMLIDKIKGDKKIRQIIIPTCLQVRESSIKRKD
CCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]