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The map label for this gene is rnfB [H]

Identifier: 148827107

GI number: 148827107

Start: 383270

End: 383926

Strand: Direct

Name: rnfB [H]

Synonym: CGSHiGG_02160

Alternate gene names: 148827107

Gene position: 383270-383926 (Clockwise)

Preceding gene: 148827106

Following gene: 148827108

Centisome position: 20.31

GC content: 39.42

Gene sequence:

>657_bases
ATGACCTTTTTATTCATCGTAATTACGCTACTCGCTTTAATTTTCGGTGCGATTTTGGGCTTTGCATCAATCAAGCTCAA
AGTGGAAGCTGATCCTGTCGTAGAGAAAATTGATGCTATTTTACCGCAAAGCCAATGTGGGCAATGTGGTTATCCTGGTT
GTAAGCCTTATGCTGAAGCCATTTGCAATGGCGATGAAATCACAAAATGTATTCCAGGTGGTCAAACAACTATCGTAAAA
ATTGCCGAAATTTTAGGGGTTGATGTACCAACAATGGAGGGCATAGAAGAACCTATCGAGAAAGTTGCTTTTATTGATGA
AAATATGTGTATTGGCTGCACAAAATGTATCCAAGCCTGTCCCGTTGATGCCATTATTGGTACAAATAAAGCAATGCACA
CGATCATTCCCGATCTTTGTACAGGTTGCGAGCTTTGTGTTGCGCCCTGCCCGACAGATTGTATTTTAATGATTCCCGTG
AAAAAAAATATTGATAATTGGGATTGGAAATTTGATGCAAAACTCGTTATTCCAGTAATGAATGTCGATGGCTCTGAAAA
AAAATTGGTTGTGGGGAATAAATGGCGGACGTATTATCTCGTTTCAATTCCGGTAAATTATGGGATTTCAAAGGTGGCAT
TCATCCACCAGAAATGA

Upstream 100 bases:

>100_bases
ACTTGTAAAATAATAAAATGATTTACCTTTTAATGATAATAACTCTGTTAATTTTATTTATTGGGTTCACTCAGTATTTT
TCAGGAAAAAGAAAGAAATA

Downstream 100 bases:

>100_bases
AATCTCAATCTAATTCACAGCCATTACGCCATCTGCCTCTCGGCACGGATTTTTACATTCCACTCAAACAACACGTAGGA
ACAACAGGCAATCTTTTAAT

Product: electron transport complex protein RnfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MTFLFIVITLLALIFGAILGFASIKLKVEADPVVEKIDAILPQSQCGQCGYPGCKPYAEAICNGDEITKCIPGGQTTIVK
IAEILGVDVPTMEGIEEPIEKVAFIDENMCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCILMIPV
KKNIDNWDWKFDAKLVIPVMNVDGSEKKLVVGNKWRTYYLVSIPVNYGISKVAFIHQK

Sequences:

>Translated_218_residues
MTFLFIVITLLALIFGAILGFASIKLKVEADPVVEKIDAILPQSQCGQCGYPGCKPYAEAICNGDEITKCIPGGQTTIVK
IAEILGVDVPTMEGIEEPIEKVAFIDENMCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCILMIPV
KKNIDNWDWKFDAKLVIPVMNVDGSEKKLVVGNKWRTYYLVSIPVNYGISKVAFIHQK
>Mature_217_residues
TFLFIVITLLALIFGAILGFASIKLKVEADPVVEKIDAILPQSQCGQCGYPGCKPYAEAICNGDEITKCIPGGQTTIVKI
AEILGVDVPTMEGIEEPIEKVAFIDENMCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCILMIPVK
KNIDNWDWKFDAKLVIPVMNVDGSEKKLVVGNKWRTYYLVSIPVNYGISKVAFIHQK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=170, Percent_Identity=61.7647058823529, Blast_Score=221, Evalue=2e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 23740; Mature: 23609

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
9.2 %Cys+Met (Translated Protein)
6.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
8.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFLFIVITLLALIFGAILGFASIKLKVEADPVVEKIDAILPQSQCGQCGYPGCKPYAEA
CHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
ICNGDEITKCIPGGQTTIVKIAEILGVDVPTMEGIEEPIEKVAFIDENMCIGCTKCIQAC
HCCCCHHHEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEECHHHHHHHC
PVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCILMIPVKKNIDNWDWKFDAKLVIPVM
CCHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCEEEEEEECCCCCCCCEEECCEEEEEEE
NVDGSEKKLVVGNKWRTYYLVSIPVNYGISKVAFIHQK
CCCCCCCEEEECCCCEEEEEEEEECCCCCEEEEEEECC
>Mature Secondary Structure 
TFLFIVITLLALIFGAILGFASIKLKVEADPVVEKIDAILPQSQCGQCGYPGCKPYAEA
HHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
ICNGDEITKCIPGGQTTIVKIAEILGVDVPTMEGIEEPIEKVAFIDENMCIGCTKCIQAC
HCCCCHHHEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEECHHHHHHHC
PVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCILMIPVKKNIDNWDWKFDAKLVIPVM
CCHHHHCCCHHHHHHHHHHHCCCCEEECCCCCCEEEEEEECCCCCCCCEEECCEEEEEEE
NVDGSEKKLVVGNKWRTYYLVSIPVNYGISKVAFIHQK
CCCCCCCEEEECCCCEEEEEEEEECCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA