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The map label for this gene is rnfA

Identifier: 148827106

GI number: 148827106

Start: 382604

End: 383182

Strand: Direct

Name: rnfA

Synonym: CGSHiGG_02155

Alternate gene names: 148827106

Gene position: 382604-383182 (Clockwise)

Preceding gene: 148827103

Following gene: 148827107

Centisome position: 20.27

GC content: 37.31

Gene sequence:

>579_bases
ATGACGCACTATATTTTATTGATTATCGGCACCGCATTAATTAACAATTTTGTATTGGTAAAATTCTTAGGTCTTTGCCC
TTTTATGGGTGTATCCAAAAAAATTGAAACGGCTGTGGGAATGGGATTAGCAACAATGTTTGTTTTAACTGTTGCTTCCC
TTTGTGCATATTTGGTCGATCACTATATTCTAATTCCCTTAAATGCTACTTTTTTGCGTACATTAGTGTTTATTTTAGTT
ATTGCTGTAGTGGTGCAATTTACCGAAATGGCAATAAACAAAACAAGTCCAACATTATATCGTTTACTCGGCATTTTCTT
GCCTTTGATAACTACAAACTGCGCAGTACTTGGTGTCGCATTATTAAATGTAAATCTCGCTCATAATTTAACAGAGTCTG
TCGTTTATGGTTTTGGTGCATCTCTCGGCTTTTCCTTAGTATTGGTACTTTTTGCCGCGCTTCGTGAACGTTTAGTCGCC
GCTGATATACCTGCCACTTTTCGCGGTTCAGCCATTGCTTTAATTACCGCAGGCTTAATGTCCCTCGCTTTTATGGGATT
TACAGGACTTGTAAAATAA

Upstream 100 bases:

>100_bases
AACAAAATCGTAACTTACCATTTCCCCTTAGCAAAATTTTCTATTGTTCTTGCTTCCATAAATAGGGATAATAACGCCCC
TATTCAAAAGGCAAAAAATA

Downstream 100 bases:

>100_bases
TAAAATGATTTACCTTTTAATGATAATAACTCTGTTAATTTTATTTATTGGGTTCACTCAGTATTTTTCAGGAAAAAGAA
AGAAATAATGACCTTTTTAT

Product: Na(+)-translocating NADH-quinone reductase subunit E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MTHYILLIIGTALINNFVLVKFLGLCPFMGVSKKIETAVGMGLATMFVLTVASLCAYLVDHYILIPLNATFLRTLVFILV
IAVVVQFTEMAINKTSPTLYRLLGIFLPLITTNCAVLGVALLNVNLAHNLTESVVYGFGASLGFSLVLVLFAALRERLVA
ADIPATFRGSAIALITAGLMSLAFMGFTGLVK

Sequences:

>Translated_192_residues
MTHYILLIIGTALINNFVLVKFLGLCPFMGVSKKIETAVGMGLATMFVLTVASLCAYLVDHYILIPLNATFLRTLVFILV
IAVVVQFTEMAINKTSPTLYRLLGIFLPLITTNCAVLGVALLNVNLAHNLTESVVYGFGASLGFSLVLVLFAALRERLVA
ADIPATFRGSAIALITAGLMSLAFMGFTGLVK
>Mature_191_residues
THYILLIIGTALINNFVLVKFLGLCPFMGVSKKIETAVGMGLATMFVLTVASLCAYLVDHYILIPLNATFLRTLVFILVI
AVVVQFTEMAINKTSPTLYRLLGIFLPLITTNCAVLGVALLNVNLAHNLTESVVYGFGASLGFSLVLVLFAALRERLVAA
DIPATFRGSAIALITAGLMSLAFMGFTGLVK

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family

Homologues:

Organism=Escherichia coli, GI1787914, Length=192, Percent_Identity=78.125, Blast_Score=308, Evalue=2e-85,
Organism=Escherichia coli, GI1787919, Length=142, Percent_Identity=35.9154929577465, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFA_HAEI8 (Q4QJQ8)

Other databases:

- EMBL:   CP000057
- RefSeq:   YP_249399.1
- STRING:   Q4QJQ8
- GeneID:   3431239
- GenomeReviews:   CP000057_GR
- KEGG:   hit:NTHI1989
- eggNOG:   COG4657
- HOGENOM:   HBG624915
- OMA:   LRTIAFI
- PhylomeDB:   Q4QJQ8
- ProtClustDB:   PRK05151
- BioCyc:   HINF281310:NTHI1989-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00459
- InterPro:   IPR003667
- InterPro:   IPR011293
- PIRSF:   PIRSF006102
- TIGRFAMs:   TIGR01943

Pfam domain/function: PF02508 Rnf-Nqr

EC number: NA

Molecular weight: Translated: 20574; Mature: 20443

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xf110df4)-; HASH(0x1196268c)-; HASH(0x1165673c)-; HASH(0x11b51a9c)-; HASH(0x116cfa90)-; HASH(0x1110b63c)-;

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHYILLIIGTALINNFVLVKFLGLCPFMGVSKKIETAVGMGLATMFVLTVASLCAYLVD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HYILIPLNATFLRTLVFILVIAVVVQFTEMAINKTSPTLYRLLGIFLPLITTNCAVLGVA
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLNVNLAHNLTESVVYGFGASLGFSLVLVLFAALRERLVAADIPATFRGSAIALITAGLM
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHH
SLAFMGFTGLVK
HHHHHHHHHCCH
>Mature Secondary Structure 
THYILLIIGTALINNFVLVKFLGLCPFMGVSKKIETAVGMGLATMFVLTVASLCAYLVD
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HYILIPLNATFLRTLVFILVIAVVVQFTEMAINKTSPTLYRLLGIFLPLITTNCAVLGVA
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLNVNLAHNLTESVVYGFGASLGFSLVLVLFAALRERLVAADIPATFRGSAIALITAGLM
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHH
SLAFMGFTGLVK
HHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA