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The map label for this gene is rnfC [H]

Identifier: 148827108

GI number: 148827108

Start: 383923

End: 385974

Strand: Direct

Name: rnfC [H]

Synonym: CGSHiGG_02165

Alternate gene names: 148827108

Gene position: 383923-385974 (Clockwise)

Preceding gene: 148827107

Following gene: 148827109

Centisome position: 20.34

GC content: 41.37

Gene sequence:

>2052_bases
ATGAAATCTCAATCTAATTCACAGCCATTACGCCATCTGCCTCTCGGCACGGATTTTTACATTCCACTCAAACAACACGT
AGGAACAACAGGCAATCTTTTAATAAAAGAGGGCGATTACGTCTTAAAAGGACAAGCCTTAACAAAAGGCGATGGCTTGC
GTATGTTGCCAGTTCACGCGCCCACTTCTGGCACAATTAAATCGATTAAACCTTATGTTGCCACGCATCCTTCAGGTCTT
GATGAACCCACAATTCATTTACAGGCGGATGGTTTAGATCAATGGATCGAACGTAATCCTATTGATGATTTTTCAACGCT
ATCGTCAGAACAACTTATTCACAAAATCTATCAAGCAGGTATAGCAGGTTTAGGCGGTGCAGTATTCCCAACTGCTGCCA
AAATTCAGTCAGCAGAGCAAAAAGTCAAACTCTTAATTATCAATGGTGCAGAATGTGAGCCTTATATCACTTGTGATGAT
CGTCTTATGCGTGAACGTGCTGATGAAATCATAAAAGGCATTCGTATTTTACGTTATATATTGCACCCTGAAAAAGTTGT
CATTGCCATTGAAGATAACAAACCAGAAGCCATATCGGCAATCCGCAATGCACTACAGGGAGCAAATGATATTAGCGTTC
GGGTTATTCCAACAAAATATCCTTCAGGTGCTACCAAACAACTGATTTATTTGCTCACAGGGATAGAAGTGCCAAGCGGT
GAGCGTTCATCCAGCATTGGCGTATTAATGCAAAATGTGGGAACAATGTTCGCAATAAAAAGAGCAGTTATAAATGACGA
GCCTTTAATTGAGCGTGTTGTCACCCTTACTGGAAATAAAATCGCTGAAAAAGGCAATTATTGGGTGCGTCTTGGCACAC
CCATTTCCCAAATATTGAGCGATGCAGGCTATCAATTTGACAAGCATTTTCCTATATTTGCAGGTGGGCCAATGATGGGG
CTAGAGCTTCCAAACCTAAATGCACCTGTGACAAAACTTGTCAATTGTTTACTTGCGCCAGATTATCTTGAATATGCCGA
ACCTGAAGCAGAACAGGCTTGTATTCGTTGTTCTAGCTGTTCTGATGCCTGCCCAGTAAATTTAATGCCACAACAACTTT
ATTGGTTTGCGCGCAGTGAAGATCACAAAAAATCGGAAGAATACGCTCTCAAAGATTGTATTGAATGTGGAATTTGCGCA
TACGTATGCCCAAGCCATATTCCTCTAATTCAATATTTCCGCCAAGAAAAAGCTAAAATCTGGCAAATAAAAGAAAAACA
AAAGAAATCAGATGAAGCCAAAATTCGCTTTGAAGCAAAACAAGCACGGATGGAACGTGAAGAACAAGAGCGTAAAGCAC
GTTCACAACGTGCAGCACAGGCTCGCCGTGAAGAATTAGCACAAACTAAAGGGGAAGATCCAGTCAAGGCGGCACTCGAA
CGCTTGAAAGCGAAAAAAGCCAATGAAACAGAATCAACGCAGATTAAAACACTAACCTCAGAAAAAGGAGAAGTTTTACC
TGATAACACAGATTTAATGGCACAACGTAAAGCACGCCGTTTAGCTCGTCAGCAAGCAGAATCTCAAGTCGAAAATCAAG
AACAACAAACTCAACCAACCGATGCGAAAAAAGCAGCAGTAGCCGCTGCTATTGCTCGGGCAAAAGCGAAAAAACTTGCA
CAAACAAATAGCACCAGCGAAGCTATTTCAAACTCTCAAACCGCAAAAAATGAAGTAGAAAAAACAAAAAGTGCGGTAGA
AAAAACAGAAAAAAATTCAACCGCACTTGACCCTAAAAAAGCAGCCGTAGCCGCCGCCATTGCTCGGGCAAAAGCAAAAA
AACTTGCACAAGCAAATAGCACCAGCGAAGCTATTTCAAACTCTCAAACCGCAGAAAATGAAGTAGAAAAAACAAAAAGT
GCGGTAGAAAAAACAGAAGAAAATTCAACCGCACTTGACCCTAAAAAAGCAGCCGTAGCCGCCGCCATTGCTCGGGCAAA
AGCGAAGAAACTGGCAAAAACACAAGCAACATTAGAAAATAATCAGGAATAA

Upstream 100 bases:

>100_bases
CTGAAAAAAAATTGGTTGTGGGGAATAAATGGCGGACGTATTATCTCGTTTCAATTCCGGTAAATTATGGGATTTCAAAG
GTGGCATTCATCCACCAGAA

Downstream 100 bases:

>100_bases
AATAATGTTTAAAATGGTTAGCTCCCCACATACCCATTCGGGAAAACTCACAGCGCATATTATGCTTTGGGTCATTTTGG
CAATGATGCCCGCTTTTTTC

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 683; Mature: 683

Protein sequence:

>683_residues
MKSQSNSQPLRHLPLGTDFYIPLKQHVGTTGNLLIKEGDYVLKGQALTKGDGLRMLPVHAPTSGTIKSIKPYVATHPSGL
DEPTIHLQADGLDQWIERNPIDDFSTLSSEQLIHKIYQAGIAGLGGAVFPTAAKIQSAEQKVKLLIINGAECEPYITCDD
RLMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGANDISVRVIPTKYPSGATKQLIYLLTGIEVPSG
ERSSSIGVLMQNVGTMFAIKRAVINDEPLIERVVTLTGNKIAEKGNYWVRLGTPISQILSDAGYQFDKHFPIFAGGPMMG
LELPNLNAPVTKLVNCLLAPDYLEYAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEEYALKDCIECGICA
YVCPSHIPLIQYFRQEKAKIWQIKEKQKKSDEAKIRFEAKQARMEREEQERKARSQRAAQARREELAQTKGEDPVKAALE
RLKAKKANETESTQIKTLTSEKGEVLPDNTDLMAQRKARRLARQQAESQVENQEQQTQPTDAKKAAVAAAIARAKAKKLA
QTNSTSEAISNSQTAKNEVEKTKSAVEKTEKNSTALDPKKAAVAAAIARAKAKKLAQANSTSEAISNSQTAENEVEKTKS
AVEKTEENSTALDPKKAAVAAAIARAKAKKLAKTQATLENNQE

Sequences:

>Translated_683_residues
MKSQSNSQPLRHLPLGTDFYIPLKQHVGTTGNLLIKEGDYVLKGQALTKGDGLRMLPVHAPTSGTIKSIKPYVATHPSGL
DEPTIHLQADGLDQWIERNPIDDFSTLSSEQLIHKIYQAGIAGLGGAVFPTAAKIQSAEQKVKLLIINGAECEPYITCDD
RLMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGANDISVRVIPTKYPSGATKQLIYLLTGIEVPSG
ERSSSIGVLMQNVGTMFAIKRAVINDEPLIERVVTLTGNKIAEKGNYWVRLGTPISQILSDAGYQFDKHFPIFAGGPMMG
LELPNLNAPVTKLVNCLLAPDYLEYAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEEYALKDCIECGICA
YVCPSHIPLIQYFRQEKAKIWQIKEKQKKSDEAKIRFEAKQARMEREEQERKARSQRAAQARREELAQTKGEDPVKAALE
RLKAKKANETESTQIKTLTSEKGEVLPDNTDLMAQRKARRLARQQAESQVENQEQQTQPTDAKKAAVAAAIARAKAKKLA
QTNSTSEAISNSQTAKNEVEKTKSAVEKTEKNSTALDPKKAAVAAAIARAKAKKLAQANSTSEAISNSQTAENEVEKTKS
AVEKTEENSTALDPKKAAVAAAIARAKAKKLAKTQATLENNQE
>Mature_683_residues
MKSQSNSQPLRHLPLGTDFYIPLKQHVGTTGNLLIKEGDYVLKGQALTKGDGLRMLPVHAPTSGTIKSIKPYVATHPSGL
DEPTIHLQADGLDQWIERNPIDDFSTLSSEQLIHKIYQAGIAGLGGAVFPTAAKIQSAEQKVKLLIINGAECEPYITCDD
RLMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGANDISVRVIPTKYPSGATKQLIYLLTGIEVPSG
ERSSSIGVLMQNVGTMFAIKRAVINDEPLIERVVTLTGNKIAEKGNYWVRLGTPISQILSDAGYQFDKHFPIFAGGPMMG
LELPNLNAPVTKLVNCLLAPDYLEYAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEEYALKDCIECGICA
YVCPSHIPLIQYFRQEKAKIWQIKEKQKKSDEAKIRFEAKQARMEREEQERKARSQRAAQARREELAQTKGEDPVKAALE
RLKAKKANETESTQIKTLTSEKGEVLPDNTDLMAQRKARRLARQQAESQVENQEQQTQPTDAKKAAVAAAIARAKAKKLA
QTNSTSEAISNSQTAKNEVEKTKSAVEKTEKNSTALDPKKAAVAAAIARAKAKKLAQANSTSEAISNSQTAENEVEKTKS
AVEKTEENSTALDPKKAAVAAAIARAKAKKLAKTQATLENNQE

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=567, Percent_Identity=53.0864197530864, Blast_Score=597, Evalue=1e-171,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 75095; Mature: 75095

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSQSNSQPLRHLPLGTDFYIPLKQHVGTTGNLLIKEGDYVLKGQALTKGDGLRMLPVHA
CCCCCCCCCCCCCCCCCCEEEEHHHHCCCCCCEEEECCCEEEECCEEECCCCEEEEEECC
PTSGTIKSIKPYVATHPSGLDEPTIHLQADGLDQWIERNPIDDFSTLSSEQLIHKIYQAG
CCCCCHHHCCCHHHCCCCCCCCCEEEEEECCHHHHHHCCCCCHHHHCCHHHHHHHHHHHH
IAGLGGAVFPTAAKIQSAEQKVKLLIINGAECEPYITCDDRLMRERADEIIKGIRILRYI
HHCCCCHHCCHHHHHHHHCCCEEEEEEECCCCCCEECCHHHHHHHHHHHHHHHHHHHHHH
LHPEKVVIAIEDNKPEAISAIRNALQGANDISVRVIPTKYPSGATKQLIYLLTGIEVPSG
HCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCC
ERSSSIGVLMQNVGTMFAIKRAVINDEPLIERVVTLTGNKIAEKGNYWVRLGTPISQILS
CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHCCCEEEEECCCHHHHHH
DAGYQFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCLLAPDYLEYAEPEAEQACIRCSSC
HCCCCCCCCCCEEECCCEEEEECCCCCCCHHHHHHHHHCCHHHHHCCCCHHHHHHHHCCC
SDACPVNLMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSHIPLIQYFRQEKAKI
CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHH
WQIKEKQKKSDEAKIRFEAKQARMEREEQERKARSQRAAQARREELAQTKGEDPVKAALE
HHHHHHHCCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
RLKAKKANETESTQIKTLTSEKGEVLPDNTDLMAQRKARRLARQQAESQVENQEQQTQPT
HHHHHCCCCCCCHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DAKKAAVAAAIARAKAKKLAQTNSTSEAISNSQTAKNEVEKTKSAVEKTEKNSTALDPKK
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH
AAVAAAIARAKAKKLAQANSTSEAISNSQTAENEVEKTKSAVEKTEENSTALDPKKAAVA
HHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
AAIARAKAKKLAKTQATLENNQE
HHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKSQSNSQPLRHLPLGTDFYIPLKQHVGTTGNLLIKEGDYVLKGQALTKGDGLRMLPVHA
CCCCCCCCCCCCCCCCCCEEEEHHHHCCCCCCEEEECCCEEEECCEEECCCCEEEEEECC
PTSGTIKSIKPYVATHPSGLDEPTIHLQADGLDQWIERNPIDDFSTLSSEQLIHKIYQAG
CCCCCHHHCCCHHHCCCCCCCCCEEEEEECCHHHHHHCCCCCHHHHCCHHHHHHHHHHHH
IAGLGGAVFPTAAKIQSAEQKVKLLIINGAECEPYITCDDRLMRERADEIIKGIRILRYI
HHCCCCHHCCHHHHHHHHCCCEEEEEEECCCCCCEECCHHHHHHHHHHHHHHHHHHHHHH
LHPEKVVIAIEDNKPEAISAIRNALQGANDISVRVIPTKYPSGATKQLIYLLTGIEVPSG
HCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCC
ERSSSIGVLMQNVGTMFAIKRAVINDEPLIERVVTLTGNKIAEKGNYWVRLGTPISQILS
CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHCCCEEEEECCCHHHHHH
DAGYQFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCLLAPDYLEYAEPEAEQACIRCSSC
HCCCCCCCCCCEEECCCEEEEECCCCCCCHHHHHHHHHCCHHHHHCCCCHHHHHHHHCCC
SDACPVNLMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSHIPLIQYFRQEKAKI
CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHH
WQIKEKQKKSDEAKIRFEAKQARMEREEQERKARSQRAAQARREELAQTKGEDPVKAALE
HHHHHHHCCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
RLKAKKANETESTQIKTLTSEKGEVLPDNTDLMAQRKARRLARQQAESQVENQEQQTQPT
HHHHHCCCCCCCHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DAKKAAVAAAIARAKAKKLAQTNSTSEAISNSQTAKNEVEKTKSAVEKTEKNSTALDPKK
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH
AAVAAAIARAKAKKLAQANSTSEAISNSQTAENEVEKTKSAVEKTEENSTALDPKKAAVA
HHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
AAIARAKAKKLAKTQATLENNQE
HHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]