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The map label for this gene is ygdK [C]

Identifier: 148827010

GI number: 148827010

Start: 252477

End: 252857

Strand: Direct

Name: ygdK [C]

Synonym: CGSHiGG_01490

Alternate gene names: 148827010

Gene position: 252477-252857 (Clockwise)

Preceding gene: 148827009

Following gene: 148827011

Centisome position: 13.38

GC content: 35.7

Gene sequence:

>381_bases
ATGATAGAACAATTACAACAAGCTAAAAATTGGGAAGATCGCTATCGCCTAATTATTCAAGCAGGCAAAAATTTACCTCG
CCCAAGCGATAATGAACTCGCTCAAATGCAACCTATTACTGGCTGCGAAGCACAAATGTGGTTTCAAATTATGCCTAAAC
ATGACCGCACTTTTCAATTCAGCGGATTTAGCGAAGCCAGAATTATGAATGGCTTGCTTTGGATTTTATTCAATAAAATC
AATGGCAAAACAGCGGATGAATTGAATACATTTGATATTATTGCCTTTTTTAGCGAACTCGGCATTTCACAACGTTTAAG
TGAAATGCGTTTAAACGGCTTAAACCAAATCGGACAGCAATTAAAAAATTTATGTATTTAA

Upstream 100 bases:

>100_bases
GCGAACGCACCACATTACGTCTTTCTTTTTCGCCTTATAATACGCAAAAAGATGTAGAGGCATTCTTCACCGCCTTAGAT
AAAGCACTGGATTTATTACA

Downstream 100 bases:

>100_bases
TCGAAACCTATTTTCGCCTGACTGCGCTCGAAAATAATATTGAATCACAAAGTCGTTTACTCAATGCAGTGATCGATCAA
TGGCGGTATAACGGGCAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MIEQLQQAKNWEDRYRLIIQAGKNLPRPSDNELAQMQPITGCEAQMWFQIMPKHDRTFQFSGFSEARIMNGLLWILFNKI
NGKTADELNTFDIIAFFSELGISQRLSEMRLNGLNQIGQQLKNLCI

Sequences:

>Translated_126_residues
MIEQLQQAKNWEDRYRLIIQAGKNLPRPSDNELAQMQPITGCEAQMWFQIMPKHDRTFQFSGFSEARIMNGLLWILFNKI
NGKTADELNTFDIIAFFSELGISQRLSEMRLNGLNQIGQQLKNLCI
>Mature_126_residues
MIEQLQQAKNWEDRYRLIIQAGKNLPRPSDNELAQMQPITGCEAQMWFQIMPKHDRTFQFSGFSEARIMNGLLWILFNKI
NGKTADELNTFDIIAFFSELGISQRLSEMRLNGLNQIGQQLKNLCI

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family [H]

Homologues:

Organism=Escherichia coli, GI1789176, Length=111, Percent_Identity=40.5405405405405, Blast_Score=89, Evalue=9e-20,
Organism=Escherichia coli, GI1787969, Length=108, Percent_Identity=28.7037037037037, Blast_Score=67, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003808 [H]

Pfam domain/function: PF02657 SufE [H]

EC number: NA

Molecular weight: Translated: 14650; Mature: 14650

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEQLQQAKNWEDRYRLIIQAGKNLPRPSDNELAQMQPITGCEAQMWFQIMPKHDRTFQF
CCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCEEEE
SGFSEARIMNGLLWILFNKINGKTADELNTFDIIAFFSELGISQRLSEMRLNGLNQIGQQ
CCCCHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
LKNLCI
HHHHCC
>Mature Secondary Structure
MIEQLQQAKNWEDRYRLIIQAGKNLPRPSDNELAQMQPITGCEAQMWFQIMPKHDRTFQF
CCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCEEEE
SGFSEARIMNGLLWILFNKINGKTADELNTFDIIAFFSELGISQRLSEMRLNGLNQIGQQ
CCCCHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
LKNLCI
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]