Click here to switch to the map view.

The map label for this gene is rlpA [C]

Identifier: 148825689

GI number: 148825689

Start: 635015

End: 635878

Strand: Direct

Name: rlpA [C]

Synonym: CGSHiEE_03160

Alternate gene names: 148825689

Gene position: 635015-635878 (Clockwise)

Preceding gene: 148825688

Following gene: 148825690

Centisome position: 35.03

GC content: 34.95

Gene sequence:

>864_bases
ATGAAATTAAAAACTGGGTTAAATTTGACCGCACTTTTGCTATTTATGATAAGCGTAGCTTTTCCTGTGCAGGCTGATAC
GCAAAAAATGTATGGTATTCGAGGGGATAATCTTTCTATCGCAACTCAAATGCCTGCGCCAAGGACTTATTCAGTAAAAG
GGCAAACTTATACCACTAAAAGTGGGAATGAAGCCAAATCTTATATTAAAGAAGGTTTAGCAAGTTATTATCATCTTAAA
TTTGATGGGCGCAAAACAGCAAGTGGCGATGTTTATAACTCAAAACAATTTACTGCAGCACATAAAACATTGCCAATAAA
TTCTTATGCTTTAGTGACAAATTTACATAACAATCGTAAAGTTATCGTACGTATTAATGATCGTGGGCCTTTTAGTGATA
AGCGTTTAATTGATCTTTCACACGCTGCGGCAAAAGAAATTGGCTTAATTTCCCGCGGCATAGGGCAGGTAAGAATTGAG
GCGTTGCACGTTGCTAAAAATGGGAATTTATCAGGTGCAGCCACAAAAACACTGGCTAAACAAGCAAAAACTCAGGAAGC
TGTCGATCGTTTAGTATTAAAATCTAACACGCTTTTTGATAACGCATCTAAGTCAATAAATGCTCTAAAAGGAACCGAAT
TTTACTGTTTGAAAATGCTTGAATTAACCTCTCGTAGCCAAGCAAATAAATTAATTACGCAACTTGCGTTAGCGAATATT
CAGACTGAAGTGAATAGGGCAGGAAATAAATATGAAATTTATATTGGGCCTTTTGATGACAAAACAAAAATGGCACAAGT
GAGAACTAAATTACAAAAAATGGCAAATAATAAGCCATTAATTGTTTATACGTATAAAAATTAA

Upstream 100 bases:

>100_bases
CTGATGTCTATTCATACGCATAAAAGTCAATTTATGAAAAGGAGCTAATTTCATTTTTTTCTTTCTTAAAGAAAGAATAA
ATGAAAAGCGTTAATATTTT

Downstream 100 bases:

>100_bases
TTGTAGGAACACACTATGTTGAAAAGAACAAACAAAAATCGCATTTTTATCAAGTTTTGTGGCACTTAGTGCTTTTTCGG
TATCTGCAGAGGATATGCAG

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MKLKTGLNLTALLLFMISVAFPVQADTQKMYGIRGDNLSIATQMPAPRTYSVKGQTYTTKSGNEAKSYIKEGLASYYHLK
FDGRKTASGDVYNSKQFTAAHKTLPINSYALVTNLHNNRKVIVRINDRGPFSDKRLIDLSHAAAKEIGLISRGIGQVRIE
ALHVAKNGNLSGAATKTLAKQAKTQEAVDRLVLKSNTLFDNASKSINALKGTEFYCLKMLELTSRSQANKLITQLALANI
QTEVNRAGNKYEIYIGPFDDKTKMAQVRTKLQKMANNKPLIVYTYKN

Sequences:

>Translated_287_residues
MKLKTGLNLTALLLFMISVAFPVQADTQKMYGIRGDNLSIATQMPAPRTYSVKGQTYTTKSGNEAKSYIKEGLASYYHLK
FDGRKTASGDVYNSKQFTAAHKTLPINSYALVTNLHNNRKVIVRINDRGPFSDKRLIDLSHAAAKEIGLISRGIGQVRIE
ALHVAKNGNLSGAATKTLAKQAKTQEAVDRLVLKSNTLFDNASKSINALKGTEFYCLKMLELTSRSQANKLITQLALANI
QTEVNRAGNKYEIYIGPFDDKTKMAQVRTKLQKMANNKPLIVYTYKN
>Mature_287_residues
MKLKTGLNLTALLLFMISVAFPVQADTQKMYGIRGDNLSIATQMPAPRTYSVKGQTYTTKSGNEAKSYIKEGLASYYHLK
FDGRKTASGDVYNSKQFTAAHKTLPINSYALVTNLHNNRKVIVRINDRGPFSDKRLIDLSHAAAKEIGLISRGIGQVRIE
ALHVAKNGNLSGAATKTLAKQAKTQEAVDRLVLKSNTLFDNASKSINALKGTEFYCLKMLELTSRSQANKLITQLALANI
QTEVNRAGNKYEIYIGPFDDKTKMAQVRTKLQKMANNKPLIVYTYKN

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=134, Percent_Identity=43.2835820895522, Blast_Score=105, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 31813; Mature: 31813

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKTGLNLTALLLFMISVAFPVQADTQKMYGIRGDNLSIATQMPAPRTYSVKGQTYTTK
CCCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCEEEEECCCCCCEEEECCCEEECC
SGNEAKSYIKEGLASYYHLKFDGRKTASGDVYNSKQFTAAHKTLPINSYALVTNLHNNRK
CCCHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCEEEEHHHCCCCCCEEEEEECCCCCE
VIVRINDRGPFSDKRLIDLSHAAAKEIGLISRGIGQVRIEALHVAKNGNLSGAATKTLAK
EEEEECCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHH
QAKTQEAVDRLVLKSNTLFDNASKSINALKGTEFYCLKMLELTSRSQANKLITQLALANI
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTEVNRAGNKYEIYIGPFDDKTKMAQVRTKLQKMANNKPLIVYTYKN
HHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC
>Mature Secondary Structure
MKLKTGLNLTALLLFMISVAFPVQADTQKMYGIRGDNLSIATQMPAPRTYSVKGQTYTTK
CCCCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCEEEEECCCCCCEEEECCCEEECC
SGNEAKSYIKEGLASYYHLKFDGRKTASGDVYNSKQFTAAHKTLPINSYALVTNLHNNRK
CCCHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCEEEEHHHCCCCCCEEEEEECCCCCE
VIVRINDRGPFSDKRLIDLSHAAAKEIGLISRGIGQVRIEALHVAKNGNLSGAATKTLAK
EEEEECCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHH
QAKTQEAVDRLVLKSNTLFDNASKSINALKGTEFYCLKMLELTSRSQANKLITQLALANI
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTEVNRAGNKYEIYIGPFDDKTKMAQVRTKLQKMANNKPLIVYTYKN
HHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]