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The map label for this gene is ywbI [H]

Identifier: 148653126

GI number: 148653126

Start: 1620882

End: 1621763

Strand: Direct

Name: ywbI [H]

Synonym: PsycPRwf_1324

Alternate gene names: 148653126

Gene position: 1620882-1621763 (Clockwise)

Preceding gene: 148653120

Following gene: 148653141

Centisome position: 54.41

GC content: 38.1

Gene sequence:

>882_bases
ATGATAACTTTGAAGCAATTACGCTGCTTTGTGACAGTTGTAAAAACAGGTGGGTTTCTTCAGGCTAGTATCCAACTCAA
TCTAACCCAACCCACCGTTACCAAATCTATCACTAGTCTTGAAGAATATTTAGGTGTAGCTCTATTTGATAAGCCGTTAA
CTCATAGAAAACGGCTAGTTAATTTAACGGAAATTGGCGAGCACCTTTATATTCAAGCAGTTGATATATTACAAAAGGCA
GATAATCTTGAACAAACAGTATTAGATTACCAACAATTAAAAGGCGGTAAGTTGCGTTTGGGGATCTCACCGTTAGGCAG
TGAAATATTAAGCGAAGCTATTTTTAACTTCTACCAAATGCATCCTAGTATAGATATTTCACTTATCGAAGATGGAGCTG
AATCACTTAAGGATGCCCTCTTACAAGGGCAGCTGGATGTGGCAACATTGATGAAGCCGATTGACGATGATTTTGACTAT
TTTTCGATATGTAGCTATCCAGTGATGGTCGTAGCAAATAAAAAACGTATGGGGAAACAAAAAACCAAGGTAACACTTAA
ATCACTATCAAATGCACCTTTAATCTTATTTACCTCTAATTCATCATTTACCCCGATGATTATACAAAACTGTCAAGCAT
TAGGTTTTGAACCTAATATTATTTGCCAAACTAATCAGTGGCACTTACTTATTGACATGGTAAAACAGGATATGGGCGTA
ACTCTTTTACCTCAATATTATACTCAAAAACTGGATTTAACAGAGTTAGTCTGCTTGCCCCTCACCCAGCCTCAGTTAAA
ATGGGAGCTTGTGATGGCTTGGCGTCGTCATCGCTTGCTTACACCGAGTATGCGAGCATGGCTAGATGAACTTATTCGGT
AG

Upstream 100 bases:

>100_bases
ATAAAAATACTATAGCCATAAATTATGAATTATATTTTTATTTTTATTCTTAATTTATATAATAAACTTCGTTCTTTCTC
CTAAATGTGGTCTATTATTT

Downstream 100 bases:

>100_bases
GAAATTAGGTCACAAGTCAATTGATTGCGCTAGCATGTCATAAATAATACTTGAGAACTTATTATGTGCATCTTTGTCAG
ATAATATATGCATCATCATC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MITLKQLRCFVTVVKTGGFLQASIQLNLTQPTVTKSITSLEEYLGVALFDKPLTHRKRLVNLTEIGEHLYIQAVDILQKA
DNLEQTVLDYQQLKGGKLRLGISPLGSEILSEAIFNFYQMHPSIDISLIEDGAESLKDALLQGQLDVATLMKPIDDDFDY
FSICSYPVMVVANKKRMGKQKTKVTLKSLSNAPLILFTSNSSFTPMIIQNCQALGFEPNIICQTNQWHLLIDMVKQDMGV
TLLPQYYTQKLDLTELVCLPLTQPQLKWELVMAWRRHRLLTPSMRAWLDELIR

Sequences:

>Translated_293_residues
MITLKQLRCFVTVVKTGGFLQASIQLNLTQPTVTKSITSLEEYLGVALFDKPLTHRKRLVNLTEIGEHLYIQAVDILQKA
DNLEQTVLDYQQLKGGKLRLGISPLGSEILSEAIFNFYQMHPSIDISLIEDGAESLKDALLQGQLDVATLMKPIDDDFDY
FSICSYPVMVVANKKRMGKQKTKVTLKSLSNAPLILFTSNSSFTPMIIQNCQALGFEPNIICQTNQWHLLIDMVKQDMGV
TLLPQYYTQKLDLTELVCLPLTQPQLKWELVMAWRRHRLLTPSMRAWLDELIR
>Mature_293_residues
MITLKQLRCFVTVVKTGGFLQASIQLNLTQPTVTKSITSLEEYLGVALFDKPLTHRKRLVNLTEIGEHLYIQAVDILQKA
DNLEQTVLDYQQLKGGKLRLGISPLGSEILSEAIFNFYQMHPSIDISLIEDGAESLKDALLQGQLDVATLMKPIDDDFDY
FSICSYPVMVVANKKRMGKQKTKVTLKSLSNAPLILFTSNSSFTPMIIQNCQALGFEPNIICQTNQWHLLIDMVKQDMGV
TLLPQYYTQKLDLTELVCLPLTQPQLKWELVMAWRRHRLLTPSMRAWLDELIR

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=286, Percent_Identity=25.1748251748252, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787879, Length=289, Percent_Identity=23.5294117647059, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI145693105, Length=291, Percent_Identity=23.0240549828179, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788748, Length=290, Percent_Identity=25.8620689655172, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787601, Length=290, Percent_Identity=24.8275862068966, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788887, Length=292, Percent_Identity=25, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788481, Length=306, Percent_Identity=27.1241830065359, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI2367136, Length=266, Percent_Identity=23.6842105263158, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1789506, Length=277, Percent_Identity=23.4657039711191, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790399, Length=300, Percent_Identity=23, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786401, Length=300, Percent_Identity=23.3333333333333, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790262, Length=259, Percent_Identity=24.3243243243243, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33330; Mature: 33330

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITLKQLRCFVTVVKTGGFLQASIQLNLTQPTVTKSITSLEEYLGVALFDKPLTHRKRLV
CCCHHHHHHHHHHEECCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
NLTEIGEHLYIQAVDILQKADNLEQTVLDYQQLKGGKLRLGISPLGSEILSEAIFNFYQM
HHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHH
HPSIDISLIEDGAESLKDALLQGQLDVATLMKPIDDDFDYFSICSYPVMVVANKKRMGKQ
CCCCEEEEEHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHCCCEEEEECHHHCCHH
KTKVTLKSLSNAPLILFTSNSSFTPMIIQNCQALGFEPNIICQTNQWHLLIDMVKQDMGV
HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCC
TLLPQYYTQKLDLTELVCLPLTQPQLKWELVMAWRRHRLLTPSMRAWLDELIR
EECCHHHHCCCCHHHEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MITLKQLRCFVTVVKTGGFLQASIQLNLTQPTVTKSITSLEEYLGVALFDKPLTHRKRLV
CCCHHHHHHHHHHEECCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
NLTEIGEHLYIQAVDILQKADNLEQTVLDYQQLKGGKLRLGISPLGSEILSEAIFNFYQM
HHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHH
HPSIDISLIEDGAESLKDALLQGQLDVATLMKPIDDDFDYFSICSYPVMVVANKKRMGKQ
CCCCEEEEEHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHCCCEEEEECHHHCCHH
KTKVTLKSLSNAPLILFTSNSSFTPMIIQNCQALGFEPNIICQTNQWHLLIDMVKQDMGV
HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCC
TLLPQYYTQKLDLTELVCLPLTQPQLKWELVMAWRRHRLLTPSMRAWLDELIR
EECCHHHHCCCCHHHEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]