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The map label for this gene is orn [H]

Identifier: 148652620

GI number: 148652620

Start: 964202

End: 964783

Strand: Direct

Name: orn [H]

Synonym: PsycPRwf_0811

Alternate gene names: 148652620

Gene position: 964202-964783 (Clockwise)

Preceding gene: 148652615

Following gene: 148652623

Centisome position: 32.37

GC content: 43.64

Gene sequence:

>582_bases
ATGAGTGACCACCCCAACAAAATTAGAATTAAGAATCAAGGCAAAAAAGGGCTTATCTGGATTGATTTAGAAATGACCGG
CCTAGACACAATGAATGATGACATCATTGAAATTGCGACCATAGTCACCGATGAGGATTTAAACATATTGGCAGAAGGTC
CAGTATTTGCCATTAAAGTCTCAGACCAAAAGCTAAACGCGATGGATGACTGGAATACCAAGCAGCATGGGCAGTCAGGC
TTAATTGATAGGGTGCGCCGTAGCAGCGTAACTTTAGAGCAAGCCGAGCAAGAAACCATTGCCTTTTTGAATAAATGGGT
CGATGAGGGTAAGTCTCCAATGTGTGGCAACTCAATCTGCCAAGACCGCCGTTTTTTAGCGCGTCAGATGCCGCAGCTAG
AGCGCTTTTTTCATTACCGAAACCTAGATGTGTCCTCTATCAAAGAGCTGTGCTATCGCTGGCGACCTGATATCTTAAAG
GGTGTTGAAAAAACGGGCAGCCACTTAGCGATGGATGATATTCGTGATTCTATTCGTGAGTTGAAGCACTATCGTCAGCA
TTTTTTCAAACTGTTGGATTAA

Upstream 100 bases:

>100_bases
TGATGTTTTACAGGCTATCTATAATAGTTTATTACCGTGATTTACGCTTTAAATTAGCAGCGTTTATGTTTTTTGTATAT
TGGCAGGTTTAGGAAAAATT

Downstream 100 bases:

>100_bases
GCACTTAAATAAAGGGCAGCGGCTTAACGGGTTGGCCACTCAAACGTAACCAGCTCAAAGCTTGAGCTAATCTGAGTGTC
CAAAGCCAAGCCAATCACCG

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MSDHPNKIRIKNQGKKGLIWIDLEMTGLDTMNDDIIEIATIVTDEDLNILAEGPVFAIKVSDQKLNAMDDWNTKQHGQSG
LIDRVRRSSVTLEQAEQETIAFLNKWVDEGKSPMCGNSICQDRRFLARQMPQLERFFHYRNLDVSSIKELCYRWRPDILK
GVEKTGSHLAMDDIRDSIRELKHYRQHFFKLLD

Sequences:

>Translated_193_residues
MSDHPNKIRIKNQGKKGLIWIDLEMTGLDTMNDDIIEIATIVTDEDLNILAEGPVFAIKVSDQKLNAMDDWNTKQHGQSG
LIDRVRRSSVTLEQAEQETIAFLNKWVDEGKSPMCGNSICQDRRFLARQMPQLERFFHYRNLDVSSIKELCYRWRPDILK
GVEKTGSHLAMDDIRDSIRELKHYRQHFFKLLD
>Mature_192_residues
SDHPNKIRIKNQGKKGLIWIDLEMTGLDTMNDDIIEIATIVTDEDLNILAEGPVFAIKVSDQKLNAMDDWNTKQHGQSGL
IDRVRRSSVTLEQAEQETIAFLNKWVDEGKSPMCGNSICQDRRFLARQMPQLERFFHYRNLDVSSIKELCYRWRPDILKG
VEKTGSHLAMDDIRDSIRELKHYRQHFFKLLD

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=173, Percent_Identity=48.5549132947977, Blast_Score=183, Evalue=9e-47,
Organism=Escherichia coli, GI87082382, Length=180, Percent_Identity=59.4444444444444, Blast_Score=233, Evalue=9e-63,
Organism=Caenorhabditis elegans, GI17557752, Length=172, Percent_Identity=45.3488372093023, Blast_Score=152, Evalue=1e-37,
Organism=Saccharomyces cerevisiae, GI6323088, Length=195, Percent_Identity=35.8974358974359, Blast_Score=118, Evalue=6e-28,
Organism=Drosophila melanogaster, GI21355135, Length=174, Percent_Identity=45.4022988505747, Blast_Score=171, Evalue=2e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 22504; Mature: 22373

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDHPNKIRIKNQGKKGLIWIDLEMTGLDTMNDDIIEIATIVTDEDLNILAEGPVFAIKV
CCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEECCCEEEEEE
SDQKLNAMDDWNTKQHGQSGLIDRVRRSSVTLEQAEQETIAFLNKWVDEGKSPMCGNSIC
CCCCCCCCCCCCCHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
QDRRFLARQMPQLERFFHYRNLDVSSIKELCYRWRPDILKGVEKTGSHLAMDDIRDSIRE
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHH
LKHYRQHFFKLLD
HHHHHHHHHHHCC
>Mature Secondary Structure 
SDHPNKIRIKNQGKKGLIWIDLEMTGLDTMNDDIIEIATIVTDEDLNILAEGPVFAIKV
CCCCCEEEEECCCCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEECCCEEEEEE
SDQKLNAMDDWNTKQHGQSGLIDRVRRSSVTLEQAEQETIAFLNKWVDEGKSPMCGNSIC
CCCCCCCCCCCCCHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
QDRRFLARQMPQLERFFHYRNLDVSSIKELCYRWRPDILKGVEKTGSHLAMDDIRDSIRE
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHH
LKHYRQHFFKLLD
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA