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The map label for this gene is 148643417

Identifier: 148643417

GI number: 148643417

Start: 1380307

End: 1380879

Strand: Reverse

Name: 148643417

Synonym: Msm_1357

Alternate gene names: NA

Gene position: 1380879-1380307 (Counterclockwise)

Preceding gene: 148643418

Following gene: 148643416

Centisome position: 74.51

GC content: 31.41

Gene sequence:

>573_bases
ATGAGTATAAAAAACGGGGCATTTGTAATGCCTGGAGATAAACTAGGAATAATTGAGCAATATTTACTTGGAAAAGGTAC
TTATGAAGATAACGGCGAGATTAAATCATCAGTATTAGGAAATGTTCAAATTGATTCAAAAATGAGGACTATTACTGTAA
AAGCCAAATCTAGCCAACCTGCTCTTTTAAAATTAGGTGATACTGTTTACGGACAGATTACAGATATAAAAACTCAAAGA
GCTAATGTAAATATTGATTGTTTAACAGATAGTAGTAGACCTTTAGCACTTCCATACATGGGTGCAATTCACATATCCCA
AGCAAAATCAGGATATTTAGATAAATTGACAGATGCTTTTAGAATTGGAGATATTGTAAAAGCAAAAGTAGTAAAAATTA
CTGGAGATAATGTTGATTTAGCTACAGTGGATGAAGATTGTGGAGTTTTAAAAGCAATGTGTACCCGTTGCAGAGATTAT
ATGAATACCACACAAAAAGAAAATGAAGTCCAGTGTAGAACATGTAAGAAAAAAGAAAAACGTGAAGTTTCTATAAATTA
TGTTAATAGCTAA

Upstream 100 bases:

>100_bases
ATGAAATTTTATTCCATGAAAGGTACAAATAGTTTTAAATATTAATAAAAATAAAATTATTATATTAATATTAATAATTC
CTTATTTTGGTGATTTGATT

Downstream 100 bases:

>100_bases
TTAAGGTTGATATGATGGATAACAATACCAATATTGAAATTATTGAAGATAAAACATTAGAACTTGAATTTATTGTACAT
GGCGAAAGCCACGGAGTATG

Product: exosome complex RNA-binding protein Csl4

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MSIKNGAFVMPGDKLGIIEQYLLGKGTYEDNGEIKSSVLGNVQIDSKMRTITVKAKSSQPALLKLGDTVYGQITDIKTQR
ANVNIDCLTDSSRPLALPYMGAIHISQAKSGYLDKLTDAFRIGDIVKAKVVKITGDNVDLATVDEDCGVLKAMCTRCRDY
MNTTQKENEVQCRTCKKKEKREVSINYVNS

Sequences:

>Translated_190_residues
MSIKNGAFVMPGDKLGIIEQYLLGKGTYEDNGEIKSSVLGNVQIDSKMRTITVKAKSSQPALLKLGDTVYGQITDIKTQR
ANVNIDCLTDSSRPLALPYMGAIHISQAKSGYLDKLTDAFRIGDIVKAKVVKITGDNVDLATVDEDCGVLKAMCTRCRDY
MNTTQKENEVQCRTCKKKEKREVSINYVNS
>Mature_189_residues
SIKNGAFVMPGDKLGIIEQYLLGKGTYEDNGEIKSSVLGNVQIDSKMRTITVKAKSSQPALLKLGDTVYGQITDIKTQRA
NVNIDCLTDSSRPLALPYMGAIHISQAKSGYLDKLTDAFRIGDIVKAKVVKITGDNVDLATVDEDCGVLKAMCTRCRDYM
NTTQKENEVQCRTCKKKEKREVSINYVNS

Specific function: Unknown

COG id: COG1096

COG function: function code J; Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20934; Mature: 20803

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKNGAFVMPGDKLGIIEQYLLGKGTYEDNGEIKSSVLGNVQIDSKMRTITVKAKSSQP
CCCCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCHHHEECCEEECCCEEEEEEEECCCCC
ALLKLGDTVYGQITDIKTQRANVNIDCLTDSSRPLALPYMGAIHISQAKSGYLDKLTDAF
CEEEECCCEEEEEEECEEECCCEEEEEEECCCCCEECCEECEEEECCCCCCCHHHHHHHH
RIGDIVKAKVVKITGDNVDLATVDEDCGVLKAMCTRCRDYMNTTQKENEVQCRTCKKKEK
HHCCEEEEEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCC
REVSINYVNS
CEEEEEEECC
>Mature Secondary Structure 
SIKNGAFVMPGDKLGIIEQYLLGKGTYEDNGEIKSSVLGNVQIDSKMRTITVKAKSSQP
CCCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCHHHEECCEEECCCEEEEEEEECCCCC
ALLKLGDTVYGQITDIKTQRANVNIDCLTDSSRPLALPYMGAIHISQAKSGYLDKLTDAF
CEEEECCCEEEEEEECEEECCCEEEEEEECCCCCEECCEECEEEECCCCCCCHHHHHHHH
RIGDIVKAKVVKITGDNVDLATVDEDCGVLKAMCTRCRDYMNTTQKENEVQCRTCKKKEK
HHCCEEEEEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCC
REVSINYVNS
CEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA