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The map label for this gene is rpoL [H]

Identifier: 148643416

GI number: 148643416

Start: 1380005

End: 1380295

Strand: Reverse

Name: rpoL [H]

Synonym: Msm_1356

Alternate gene names: 148643416

Gene position: 1380295-1380005 (Counterclockwise)

Preceding gene: 148643417

Following gene: 148643415

Centisome position: 74.48

GC content: 32.3

Gene sequence:

>291_bases
ATGATGGATAACAATACCAATATTGAAATTATTGAAGATAAAACATTAGAACTTGAATTTATTGTACATGGCGAAAGCCA
CGGAGTATGTAATGCACTTAGACACATCTTAATGCAAGATAGTGATGTTGAATATGCTGTTTACAATATTGACCATCCTC
TTACCGGTGAACCAAATATGACCATCAAAACCAAAAGAGGAAAAAGACCAAGGAAAGTATTGAAAAAAGCAGCTAGCCAA
CTTAAAGATGATGCTGCAGACTTTAAAAAACTTATTGAAGAAACTTTATAA

Upstream 100 bases:

>100_bases
ATACCACACAAAAAGAAAATGAAGTCCAGTGTAGAACATGTAAGAAAAAAGAAAAACGTGAAGTTTCTATAAATTATGTT
AATAGCTAATTAAGGTTGAT

Downstream 100 bases:

>100_bases
CTTCAATAAAAACTTATTTTATTTTGAGGGGATATGATGGGAGATTATAAAATTCCTTCATTAACCACAGACATTTTTAT
TTTTGATGAAAACACTGATT

Product: DNA-directed RNA polymerase, subunit L, RpoL

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 96; Mature: 96

Protein sequence:

>96_residues
MMDNNTNIEIIEDKTLELEFIVHGESHGVCNALRHILMQDSDVEYAVYNIDHPLTGEPNMTIKTKRGKRPRKVLKKAASQ
LKDDAADFKKLIEETL

Sequences:

>Translated_96_residues
MMDNNTNIEIIEDKTLELEFIVHGESHGVCNALRHILMQDSDVEYAVYNIDHPLTGEPNMTIKTKRGKRPRKVLKKAASQ
LKDDAADFKKLIEETL
>Mature_96_residues
MMDNNTNIEIIEDKTLELEFIVHGESHGVCNALRHILMQDSDVEYAVYNIDHPLTGEPNMTIKTKRGKRPRKVLKKAASQ
LKDDAADFKKLIEETL

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1761

COG function: function code K; DNA-directed RNA polymerase, subunit L

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009025
- InterPro:   IPR008193
- InterPro:   IPR022905 [H]

Pfam domain/function: NA

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 10979; Mature: 10979

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDNNTNIEIIEDKTLELEFIVHGESHGVCNALRHILMQDSDVEYAVYNIDHPLTGEPNM
CCCCCCCEEEEECCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCE
TIKTKRGKRPRKVLKKAASQLKDDAADFKKLIEETL
EEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure
MMDNNTNIEIIEDKTLELEFIVHGESHGVCNALRHILMQDSDVEYAVYNIDHPLTGEPNM
CCCCCCCEEEEECCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCE
TIKTKRGKRPRKVLKKAASQLKDDAADFKKLIEETL
EEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]