Click here to switch to the map view.

The map label for this gene is 148642906

Identifier: 148642906

GI number: 148642906

Start: 803195

End: 803821

Strand: Reverse

Name: 148642906

Synonym: Msm_0846

Alternate gene names: NA

Gene position: 803821-803195 (Counterclockwise)

Preceding gene: 148642907

Following gene: 148642905

Centisome position: 43.38

GC content: 29.98

Gene sequence:

>627_bases
ATGGAGTGTCCAATTTGCGGTTCTGATGATTTTGATATTTTAAATTCAAAGCAGAAATCATCTAAAAAGAAGATTACGGA
AGAATATTTATTAAAATGTGTAGATTGCGGTCATGTTTTTAAAAATGTTGTTTCATCTAAAAAACCTCAATTGTATAGGG
TTATTATTTCAAAGCAGGGTGAATCTATAAAAACATTCATCGAATTATCCCCTAATGATGAATTGGCTGTTGGAGATAGT
TTGCTTACTGAAGAAGGTCAGGTTGAAATAACAAGTATTGAAACTGAAAATAAACGTGTTAAAAAAGCTTTAGTTGAAGA
TATTGTTACAATATGGGCCAATTCAGTTGAAATTCCTGCACGTATAGGATTTTCTGTTGATTTGCATGGTGAAGTCGATT
CATATAAATTGGATTTGGACAGGGATTTCCAGATATCTACAGAAGATATTGTTAAAATTGATAAGCACATTGTTAGAATA
CATGTTATTAAAACACAGGAACGTAAAATTACTTCCGGATTTGCAAGAGCTGAAGTAATTAAAAGAGTTTATGGAAAACC
TGTTAAATTCAATAATTTCGATTATGATTTAACCAAATATATTGTTAAGAAAACATTAAGCGAGTAA

Upstream 100 bases:

>100_bases
CCTTTTAAAGAGTTTATGTTAGATATTTTAGAAGATAATGGTCTTGTTAATCATTATCTAAAAGAAAAACAATAATTTTT
ATTTTTTGGAGGCATTAATA

Downstream 100 bases:

>100_bases
GTTTCATGAAAGTATATATTGACACATATGGCTGTACATTCAATAAAGCCGACGCTCAGATAATGGGGGGAGTTTTAAAA
GAAAATCATATTGATTTGGT

Product: uncharacterized Zn-finger protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MECPICGSDDFDILNSKQKSSKKKITEEYLLKCVDCGHVFKNVVSSKKPQLYRVIISKQGESIKTFIELSPNDELAVGDS
LLTEEGQVEITSIETENKRVKKALVEDIVTIWANSVEIPARIGFSVDLHGEVDSYKLDLDRDFQISTEDIVKIDKHIVRI
HVIKTQERKITSGFARAEVIKRVYGKPVKFNNFDYDLTKYIVKKTLSE

Sequences:

>Translated_208_residues
MECPICGSDDFDILNSKQKSSKKKITEEYLLKCVDCGHVFKNVVSSKKPQLYRVIISKQGESIKTFIELSPNDELAVGDS
LLTEEGQVEITSIETENKRVKKALVEDIVTIWANSVEIPARIGFSVDLHGEVDSYKLDLDRDFQISTEDIVKIDKHIVRI
HVIKTQERKITSGFARAEVIKRVYGKPVKFNNFDYDLTKYIVKKTLSE
>Mature_208_residues
MECPICGSDDFDILNSKQKSSKKKITEEYLLKCVDCGHVFKNVVSSKKPQLYRVIISKQGESIKTFIELSPNDELAVGDS
LLTEEGQVEITSIETENKRVKKALVEDIVTIWANSVEIPARIGFSVDLHGEVDSYKLDLDRDFQISTEDIVKIDKHIVRI
HVIKTQERKITSGFARAEVIKRVYGKPVKFNNFDYDLTKYIVKKTLSE

Specific function: Unknown

COG id: COG1326

COG function: function code R; Uncharacterized archaeal Zn-finger protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012041
- InterPro:   IPR007853 [H]

Pfam domain/function: PF05180 zf-DNL [H]

EC number: NA

Molecular weight: Translated: 23714; Mature: 23714

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MECPICGSDDFDILNSKQKSSKKKITEEYLLKCVDCGHVFKNVVSSKKPQLYRVIISKQG
CCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
ESIKTFIELSPNDELAVGDSLLTEEGQVEITSIETENKRVKKALVEDIVTIWANSVEIPA
CCEEEEEEECCCCCEEECCHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCE
RIGFSVDLHGEVDSYKLDLDRDFQISTEDIVKIDKHIVRIHVIKTQERKITSGFARAEVI
EECEEEEECCCCCCEEECCCCCCEECHHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHH
KRVYGKPVKFNNFDYDLTKYIVKKTLSE
HHHHCCCEECCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MECPICGSDDFDILNSKQKSSKKKITEEYLLKCVDCGHVFKNVVSSKKPQLYRVIISKQG
CCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
ESIKTFIELSPNDELAVGDSLLTEEGQVEITSIETENKRVKKALVEDIVTIWANSVEIPA
CCEEEEEEECCCCCEEECCHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCE
RIGFSVDLHGEVDSYKLDLDRDFQISTEDIVKIDKHIVRIHVIKTQERKITSGFARAEVI
EECEEEEECCCCCCEEECCCCCCEECHHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHH
KRVYGKPVKFNNFDYDLTKYIVKKTLSE
HHHHCCCEECCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]