| Definition | Methanobrevibacter smithii ATCC 35061 chromosome, complete genome. |
|---|---|
| Accession | NC_009515 |
| Length | 1,853,160 |
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The map label for this gene is yleA [C]
Identifier: 148642905
GI number: 148642905
Start: 801909
End: 803189
Strand: Reverse
Name: yleA [C]
Synonym: Msm_0845
Alternate gene names: 148642905
Gene position: 803189-801909 (Counterclockwise)
Preceding gene: 148642906
Following gene: 148642904
Centisome position: 43.34
GC content: 34.82
Gene sequence:
>1281_bases ATGAAAGTATATATTGACACATATGGCTGTACATTCAATAAAGCCGACGCTCAGATAATGGGGGGAGTTTTAAAAGAAAA TCATATTGATTTGGTTGATTCTCCTGAACTGGCAGATGTTATAATTGTAAATACATGTTATGTAAAGCTCCCGACTGAAA ATAAGGTAGTTTATAAAATTCAGCAGTTGCAGGAAAAATTTCCAGATAAAAAAGTTATCGTAAGCGGGTGCATGGTTGAA ATTGATCCTGAAAAATTAGAAAAAGTAGCTCCTGACTGCAGCTGGATAGGACCTCATCAACTTAATAAAACAGCAGATGT AGTTAACGGAACTTATTGTGGCAGGGTTATTCGTGAGTGCGGATTTTCAAAAGACAGTAAAGTTGGGGTTCCTAAAGTTT CTGATGGTTCTTTAATTCACATAATTCAAATAGCTGAGGGCTGTTTGGGAGCATGTACTTTTTGCTGTACTCGTTTTGCA AGAGGACCATTAAACAGTTATCCGATTAAGGATATAGTTGCCGAAGCTAAAAAAGCTATTGATGATGGTGCTGTTGAAAT TCAGCTTACTGCTCAGGACACTGCCGCTTTCGGATATGATAGTGGCGAAAAACTGTCTGATTTAATTAAAGAAGTGGCTA ATTTGGATGGAGAATTTCGTGTTCGTGTTGGAATGATGCATCCTAAAAACATTTTAAATAATGTTGATGAAATAATTGAT GCAATTAAACATCCGAAGGTATATAATTTCATTCATTTGCCTGTACAAACAGGAAGCAATAAAGTTTTATCTGAAATGAG AAGAGGCCATACACTGGATCAGTATCTGGATATTGTTTCAAAATTTAAAAGTGAAATTCCGGATTTGACCTTGGCGGTAG ATATTATTGTCGGATATCCAACTGAAAGTGATGAAGATTTCCAGTTAACTGTTGATTTACTTAGAAATATAAAACCAAGT TTGATTCATTTGTCAAAATATCAGCATAGGAAAGGTGCAGTTTCATCTTCTCTTAAGGAAATTCCCCATGAAGTCATGAA AAAAAGGTCTAGGAATTTGTCTAGAATCAAAACTGAAATTACTGAAGAAGAAAACAAAGAATTAGTTGGTTCTGTTCAAA ATGCCGTTGTTGTGGAAGTAGGTTCTAAAGGTGGATTTATAGCTAAAACAGATTCTTATATTCCAGTAATTGTTGACGGT GTTAATTTAGGAGACTTTATTAAGGTTAAAATCACTGATGCAACAGCTACTTACCTTAAGGGTGATGTTGTGTCAAAATA A
Upstream 100 bases:
>100_bases AAGTAATTAAAAGAGTTTATGGAAAACCTGTTAAATTCAATAATTTCGATTATGATTTAACCAAATATATTGTTAAGAAA ACATTAAGCGAGTAAGTTTC
Downstream 100 bases:
>100_bases TTTTTTATTTTTCTGTTATGGTTTATTTTTCTATCATTGCTTATTTTTGTTCTTCAATTATTAACTTTGTTTTTTAAATT TTCCAATTTGGAAAATGATA
Product: 2-methylthioadenine synthetase, MiaB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 426; Mature: 426
Protein sequence:
>426_residues MKVYIDTYGCTFNKADAQIMGGVLKENHIDLVDSPELADVIIVNTCYVKLPTENKVVYKIQQLQEKFPDKKVIVSGCMVE IDPEKLEKVAPDCSWIGPHQLNKTADVVNGTYCGRVIRECGFSKDSKVGVPKVSDGSLIHIIQIAEGCLGACTFCCTRFA RGPLNSYPIKDIVAEAKKAIDDGAVEIQLTAQDTAAFGYDSGEKLSDLIKEVANLDGEFRVRVGMMHPKNILNNVDEIID AIKHPKVYNFIHLPVQTGSNKVLSEMRRGHTLDQYLDIVSKFKSEIPDLTLAVDIIVGYPTESDEDFQLTVDLLRNIKPS LIHLSKYQHRKGAVSSSLKEIPHEVMKKRSRNLSRIKTEITEEENKELVGSVQNAVVVEVGSKGGFIAKTDSYIPVIVDG VNLGDFIKVKITDATATYLKGDVVSK
Sequences:
>Translated_426_residues MKVYIDTYGCTFNKADAQIMGGVLKENHIDLVDSPELADVIIVNTCYVKLPTENKVVYKIQQLQEKFPDKKVIVSGCMVE IDPEKLEKVAPDCSWIGPHQLNKTADVVNGTYCGRVIRECGFSKDSKVGVPKVSDGSLIHIIQIAEGCLGACTFCCTRFA RGPLNSYPIKDIVAEAKKAIDDGAVEIQLTAQDTAAFGYDSGEKLSDLIKEVANLDGEFRVRVGMMHPKNILNNVDEIID AIKHPKVYNFIHLPVQTGSNKVLSEMRRGHTLDQYLDIVSKFKSEIPDLTLAVDIIVGYPTESDEDFQLTVDLLRNIKPS LIHLSKYQHRKGAVSSSLKEIPHEVMKKRSRNLSRIKTEITEEENKELVGSVQNAVVVEVGSKGGFIAKTDSYIPVIVDG VNLGDFIKVKITDATATYLKGDVVSK >Mature_426_residues MKVYIDTYGCTFNKADAQIMGGVLKENHIDLVDSPELADVIIVNTCYVKLPTENKVVYKIQQLQEKFPDKKVIVSGCMVE IDPEKLEKVAPDCSWIGPHQLNKTADVVNGTYCGRVIRECGFSKDSKVGVPKVSDGSLIHIIQIAEGCLGACTFCCTRFA RGPLNSYPIKDIVAEAKKAIDDGAVEIQLTAQDTAAFGYDSGEKLSDLIKEVANLDGEFRVRVGMMHPKNILNNVDEIID AIKHPKVYNFIHLPVQTGSNKVLSEMRRGHTLDQYLDIVSKFKSEIPDLTLAVDIIVGYPTESDEDFQLTVDLLRNIKPS LIHLSKYQHRKGAVSSSLKEIPHEVMKKRSRNLSRIKTEITEEENKELVGSVQNAVVVEVGSKGGFIAKTDSYIPVIVDG VNLGDFIKVKITDATATYLKGDVVSK
Specific function: Unknown
COG id: COG0621
COG function: function code J; 2-methylthioadenine synthetase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 TRAM domain [H]
Homologues:
Organism=Homo sapiens, GI93277076, Length=435, Percent_Identity=33.3333333333333, Blast_Score=262, Evalue=4e-70, Organism=Homo sapiens, GI28872784, Length=487, Percent_Identity=27.9260780287474, Blast_Score=164, Evalue=1e-40, Organism=Homo sapiens, GI28872782, Length=486, Percent_Identity=27.1604938271605, Blast_Score=164, Evalue=1e-40, Organism=Escherichia coli, GI1786882, Length=441, Percent_Identity=29.2517006802721, Blast_Score=186, Evalue=3e-48, Organism=Escherichia coli, GI1787057, Length=446, Percent_Identity=28.2511210762332, Blast_Score=153, Evalue=2e-38, Organism=Caenorhabditis elegans, GI71996771, Length=349, Percent_Identity=32.6647564469914, Blast_Score=201, Evalue=5e-52, Organism=Caenorhabditis elegans, GI17553146, Length=467, Percent_Identity=26.5524625267666, Blast_Score=147, Evalue=1e-35, Organism=Drosophila melanogaster, GI19922432, Length=435, Percent_Identity=31.7241379310345, Blast_Score=235, Evalue=4e-62, Organism=Drosophila melanogaster, GI21356207, Length=491, Percent_Identity=25.8655804480652, Blast_Score=166, Evalue=3e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006638 - InterPro: IPR005839 - InterPro: IPR020612 - InterPro: IPR013848 - InterPro: IPR006466 - InterPro: IPR007197 - InterPro: IPR002792 [H]
Pfam domain/function: PF04055 Radical_SAM; PF01938 TRAM; PF00919 UPF0004 [H]
EC number: NA
Molecular weight: Translated: 47056; Mature: 47056
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: PS50926 TRAM ; PS01278 UPF0004
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVYIDTYGCTFNKADAQIMGGVLKENHIDLVDSPELADVIIVNTCYVKLPTENKVVYKI CEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHH QQLQEKFPDKKVIVSGCMVEIDPEKLEKVAPDCSWIGPHQLNKTADVVNGTYCGRVIREC HHHHHHCCCCEEEEECCEEEECHHHHHHHCCCCCCCCHHHCCCHHHHHCCHHHHHHHHHC GFSKDSKVGVPKVSDGSLIHIIQIAEGCLGACTFCCTRFARGPLNSYPIKDIVAEAKKAI CCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC DDGAVEIQLTAQDTAAFGYDSGEKLSDLIKEVANLDGEFRVRVGMMHPKNILNNVDEIID CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHH AIKHPKVYNFIHLPVQTGSNKVLSEMRRGHTLDQYLDIVSKFKSEIPDLTLAVDIIVGYP HHCCCCEEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEECC TESDEDFQLTVDLLRNIKPSLIHLSKYQHRKGAVSSSLKEIPHEVMKKRSRNLSRIKTEI CCCCCCCEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH TEEENKELVGSVQNAVVVEVGSKGGFIAKTDSYIPVIVDGVNLGDFIKVKITDATATYLK HHHHHHHHHHHHCCEEEEEECCCCCEEEECCCCCEEEEECCCCCCEEEEEEECCHHHHHC GDVVSK CCCCCC >Mature Secondary Structure MKVYIDTYGCTFNKADAQIMGGVLKENHIDLVDSPELADVIIVNTCYVKLPTENKVVYKI CEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHH QQLQEKFPDKKVIVSGCMVEIDPEKLEKVAPDCSWIGPHQLNKTADVVNGTYCGRVIREC HHHHHHCCCCEEEEECCEEEECHHHHHHHCCCCCCCCHHHCCCHHHHHCCHHHHHHHHHC GFSKDSKVGVPKVSDGSLIHIIQIAEGCLGACTFCCTRFARGPLNSYPIKDIVAEAKKAI CCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC DDGAVEIQLTAQDTAAFGYDSGEKLSDLIKEVANLDGEFRVRVGMMHPKNILNNVDEIID CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHH AIKHPKVYNFIHLPVQTGSNKVLSEMRRGHTLDQYLDIVSKFKSEIPDLTLAVDIIVGYP HHCCCCEEEEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEECC TESDEDFQLTVDLLRNIKPSLIHLSKYQHRKGAVSSSLKEIPHEVMKKRSRNLSRIKTEI CCCCCCCEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH TEEENKELVGSVQNAVVVEVGSKGGFIAKTDSYIPVIVDGVNLGDFIKVKITDATATYLK HHHHHHHHHHHHCCEEEEEECCCCCEEEECCCCCEEEEECCCCCCEEEEEEECCHHHHHC GDVVSK CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9371463 [H]