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The map label for this gene is yibD [C]

Identifier: 148360534

GI number: 148360534

Start: 1005135

End: 1005914

Strand: Direct

Name: yibD [C]

Synonym: LPC_2476

Alternate gene names: 148360534

Gene position: 1005135-1005914 (Clockwise)

Preceding gene: 148360535

Following gene: 148360533

Centisome position: 28.1

GC content: 35.9

Gene sequence:

>780_bases
ATGTTATCCGTAATCATTATCACAAAAAATGAAGAAGCCAACATAAGGCGGTGCTTGGAATCCGTTCATTTTGCAGATGA
AATAATTGTATTGGACTCTGGCAGCACAGATAATACATTAGCTATAGCCAGGGAGTATACGGATAAAGTATTTTCAACAG
ATTGGCAAGGCTATGGCATCCAAAAGGATAGGGCCTTACAGAAGGCTCAAGGGGATTGGGTTTTAAATCTTGATGCTGAT
GAATCAGTAAGCTCGGAATTACGACAGGAAATGCTACAGGCCATTTCATCGGATACAGCAGATGCATTTCGTATTCCTAT
ACAAATGATTTTTTATAATCAAGTTTTAAAATATTCAGGAAGTCCTAAAAGGCATATACGATTATTTAAAAGAGAGAATG
CTTGTTATAGCAAAGACATCGTTCATGAAAAAGTATTGATTCCTGTTAATGCGAGAGTGGGGAAACTAAAAAAACCTATT
TGGCATCATTCTTTTAGCGATGTACATCATGTGCTATACAAACTTAACAAATATTCTTCTTATAGTGCGAAAATCCGTAT
AGAATCCAATGAAAAAGTTGGATTAGTAAAAACTTTTTTTAGTGCCCTATGGATGTTTGTCAGATGCCTTTTTTTACAGA
AGGGATTTTTAGACGGCAGGGCAGGTTTTTTGTTTGCAGTATTTGGGGCGCAAGGCGCTTTTTATCGCGGGGTCAAACAA
ATATATAAAGACAGGGATATCAATAAATTACCCAGTGTAAATCATATAAAAGAGGAATAA

Upstream 100 bases:

>100_bases
ATTTCTTTTTGTGACCGCTAAACGAATATTATTCCTTTTTACCTTGTTACAATCCGGCTTAATTATCGATATAATATTTA
TTTTGAATTGATATAAAGCC

Downstream 100 bases:

>100_bases
TCGTGCGATTAACCATAATGGATACCAAGGGTATTTTATTAGCTCCTTTTTTCTTTATCTCATTTATGTTTTTTATTCCG
ATCAGTCCTACGATAAAGTC

Product: lipopolysaccharide biosynthesis glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MLSVIIITKNEEANIRRCLESVHFADEIIVLDSGSTDNTLAIAREYTDKVFSTDWQGYGIQKDRALQKAQGDWVLNLDAD
ESVSSELRQEMLQAISSDTADAFRIPIQMIFYNQVLKYSGSPKRHIRLFKRENACYSKDIVHEKVLIPVNARVGKLKKPI
WHHSFSDVHHVLYKLNKYSSYSAKIRIESNEKVGLVKTFFSALWMFVRCLFLQKGFLDGRAGFLFAVFGAQGAFYRGVKQ
IYKDRDINKLPSVNHIKEE

Sequences:

>Translated_259_residues
MLSVIIITKNEEANIRRCLESVHFADEIIVLDSGSTDNTLAIAREYTDKVFSTDWQGYGIQKDRALQKAQGDWVLNLDAD
ESVSSELRQEMLQAISSDTADAFRIPIQMIFYNQVLKYSGSPKRHIRLFKRENACYSKDIVHEKVLIPVNARVGKLKKPI
WHHSFSDVHHVLYKLNKYSSYSAKIRIESNEKVGLVKTFFSALWMFVRCLFLQKGFLDGRAGFLFAVFGAQGAFYRGVKQ
IYKDRDINKLPSVNHIKEE
>Mature_259_residues
MLSVIIITKNEEANIRRCLESVHFADEIIVLDSGSTDNTLAIAREYTDKVFSTDWQGYGIQKDRALQKAQGDWVLNLDAD
ESVSSELRQEMLQAISSDTADAFRIPIQMIFYNQVLKYSGSPKRHIRLFKRENACYSKDIVHEKVLIPVNARVGKLKKPI
WHHSFSDVHHVLYKLNKYSSYSAKIRIESNEKVGLVKTFFSALWMFVRCLFLQKGFLDGRAGFLFAVFGAQGAFYRGVKQ
IYKDRDINKLPSVNHIKEE

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family. WaaE/kdtX subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 29803; Mature: 29803

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: PS00141 ASP_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSVIIITKNEEANIRRCLESVHFADEIIVLDSGSTDNTLAIAREYTDKVFSTDWQGYGI
CEEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEHHHHHHHHHHCCCCCCCCC
QKDRALQKAQGDWVLNLDADESVSSELRQEMLQAISSDTADAFRIPIQMIFYNQVLKYSG
CHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
SPKRHIRLFKRENACYSKDIVHEKVLIPVNARVGKLKKPIWHHSFSDVHHVLYKLNKYSS
CCHHHHHHHHHCCCHHHHHHHHCEEEEECCCCHHHHCCCHHCCCHHHHHHHHHHHHCCCC
YSAKIRIESNEKVGLVKTFFSALWMFVRCLFLQKGFLDGRAGFLFAVFGAQGAFYRGVKQ
CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHH
IYKDRDINKLPSVNHIKEE
HHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLSVIIITKNEEANIRRCLESVHFADEIIVLDSGSTDNTLAIAREYTDKVFSTDWQGYGI
CEEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEHHHHHHHHHHCCCCCCCCC
QKDRALQKAQGDWVLNLDADESVSSELRQEMLQAISSDTADAFRIPIQMIFYNQVLKYSG
CHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
SPKRHIRLFKRENACYSKDIVHEKVLIPVNARVGKLKKPIWHHSFSDVHHVLYKLNKYSS
CCHHHHHHHHHCCCHHHHHHHHCEEEEECCCCHHHHCCCHHCCCHHHHHHHHHHHHCCCC
YSAKIRIESNEKVGLVKTFFSALWMFVRCLFLQKGFLDGRAGFLFAVFGAQGAFYRGVKQ
CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHH
IYKDRDINKLPSVNHIKEE
HHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]