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The map label for this gene is kaiC2

Identifier: 148360205

GI number: 148360205

Start: 1345381

End: 1347033

Strand: Reverse

Name: kaiC2

Synonym: LPC_2137

Alternate gene names: NA

Gene position: 1347033-1345381 (Counterclockwise)

Preceding gene: 148358695

Following gene: 148360206

Centisome position: 37.66

GC content: 37.93

Gene sequence:

>1653_bases
GTGAATATCTATAAAACAAAAACGGGAGTTAAGGGATTAGATGATGTTTTAAATGGTGGTTATATAAAGAACGAACCAAC
CCTTCTCAAAGGCGGCCCTGGCACAGGAAAAACAATATTTACCCTTTTTTTTACACATGAACAACTTAAGTCAAACAACA
ACGTCATTTATATCACCTGTGATGAATCGCCAGAGAAAATTATTGCTCATATGGATGGCTTTAACCTGGAAGGCGGCAAG
TTTTTGCAAGAAGGCAAGTTTTTAATTCTTGATTTTACACCTGTATTGAGTGATGAAGTAGCTGGGGAGTTCAACATCAA
TGCGCTTTTACTCCGTATTGAGCAGGCACAACAGAAAATCAAAGCCAATACACTAATTATTGACTCACTTCAATCCATCC
TTTTAGGCATCAAAAATTATGATCCCAACTACGAGTTGTTGAGATTGTTTCAGTGGGCGCGGCAAAAAAATCTTACCGTT
CTCACAACGATGGCCGAAACCCAAACGATTTTACAAACAGAAATCTATGACGAATATGTTGTTGATTGTGCTATTGAGCT
AAAACAAAAAGTCAATAACGACCTGATGACGCGCTATTTGCGAATCATTAAAAATCGTGGTTCGTCTCATGGGACTAATG
AGTATCCCTTTTCTATTACTCATAAGGGCATTTCCTTGCTTCCCATAACCAGCACAAAACTGAATACAACAATTCCCGCT
GAATATCTCCGCACTGGCATAAAAGTCCTGGATAGGATGTTAGACAATAAAGGGTACCAAACAGGATCGCAAATAATAAT
CAGCGGCCGCTCCGGAACAGCAAAAACACTTTTTGCAGCAAGTTTCGCCCAATCCGCTGTTCGCCAAGGCAGGAAAGTGC
TGTTCATCTCATTTGAGGAATCCCCAAATGATTTAATCCATCATGTCAAGTCCATCAATATTGATTTAATGAAAGACATC
ACCAAAAAAAAATTACACATTGACTCAAGACGCTCTGTGGAAATGGGACTGGAAGACCATATTATTTCAATCATCGAATT
AACAGAAGAAAAGCAATTTGATGTCCTGATACTGGATCCCATCTCATCTCTGTTGGATTTGGGTAATACGATGGAGGTCA
AGAGATTGTTCATACGTTTCATTTCTCATATGAAATCTATCAATAAAACTCTTTTTTTTACTGAACTGATACCCGATTAT
TCCAAAGAGCTAACCATACTGGGCTTATCCAGCTTAACAGAAACCTGGATTCGCTTATCCAATGTGGAAAACAATGGAGA
ATTCAATCGATTAATCCACATTGCCAAGGCGCGTGGCATAAAAACATCGAACCAAATCAAAGAATTTTATGTCACGGATA
AAGGTATTAACATCGAAGCCCCTTATCTCGGTGATAACCAGATGATGTTTGGTTCTCAAAAATCAGCCCACATCTTGAGA
GAAAAACAAGAATTACAACAGAGGAAAGAAGAAATTAAACGCCTAGAACGTGAAATCACTAATCTTACAGAAATACAACA
TGCTCAGCTCAAAATTCAAGAAGCAAACTTTATAGCAAAAAGAAGTGAGTTGATTGCTAAAAAAAACGAACTGATTGCTA
AAGAAGAAGCGCTGATTAAACGAATGGAGTCCAACAAATTGTTAAGAGAGTAA

Upstream 100 bases:

>100_bases
CAAGACGAAATATTAGATCTATAATTAGACAGTCAGCATATTTTTTTATCACCTCAACAGTGGTATTTTAAAGATATGCA
TCCGTTGAGAGGACGAAAAT

Downstream 100 bases:

>100_bases
ATGAATGACTCGAACTAAGCTAAAACTGTTTGTGATTGGAAATAGTGCTATATCAAAACGTGCCATTATTAATTTGCAAT
CGATATGCTCAGATCCCAAG

Product: circadian clock protein KaiC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 550; Mature: 550

Protein sequence:

>550_residues
MNIYKTKTGVKGLDDVLNGGYIKNEPTLLKGGPGTGKTIFTLFFTHEQLKSNNNVIYITCDESPEKIIAHMDGFNLEGGK
FLQEGKFLILDFTPVLSDEVAGEFNINALLLRIEQAQQKIKANTLIIDSLQSILLGIKNYDPNYELLRLFQWARQKNLTV
LTTMAETQTILQTEIYDEYVVDCAIELKQKVNNDLMTRYLRIIKNRGSSHGTNEYPFSITHKGISLLPITSTKLNTTIPA
EYLRTGIKVLDRMLDNKGYQTGSQIIISGRSGTAKTLFAASFAQSAVRQGRKVLFISFEESPNDLIHHVKSINIDLMKDI
TKKKLHIDSRRSVEMGLEDHIISIIELTEEKQFDVLILDPISSLLDLGNTMEVKRLFIRFISHMKSINKTLFFTELIPDY
SKELTILGLSSLTETWIRLSNVENNGEFNRLIHIAKARGIKTSNQIKEFYVTDKGINIEAPYLGDNQMMFGSQKSAHILR
EKQELQQRKEEIKRLEREITNLTEIQHAQLKIQEANFIAKRSELIAKKNELIAKEEALIKRMESNKLLRE

Sequences:

>Translated_550_residues
MNIYKTKTGVKGLDDVLNGGYIKNEPTLLKGGPGTGKTIFTLFFTHEQLKSNNNVIYITCDESPEKIIAHMDGFNLEGGK
FLQEGKFLILDFTPVLSDEVAGEFNINALLLRIEQAQQKIKANTLIIDSLQSILLGIKNYDPNYELLRLFQWARQKNLTV
LTTMAETQTILQTEIYDEYVVDCAIELKQKVNNDLMTRYLRIIKNRGSSHGTNEYPFSITHKGISLLPITSTKLNTTIPA
EYLRTGIKVLDRMLDNKGYQTGSQIIISGRSGTAKTLFAASFAQSAVRQGRKVLFISFEESPNDLIHHVKSINIDLMKDI
TKKKLHIDSRRSVEMGLEDHIISIIELTEEKQFDVLILDPISSLLDLGNTMEVKRLFIRFISHMKSINKTLFFTELIPDY
SKELTILGLSSLTETWIRLSNVENNGEFNRLIHIAKARGIKTSNQIKEFYVTDKGINIEAPYLGDNQMMFGSQKSAHILR
EKQELQQRKEEIKRLEREITNLTEIQHAQLKIQEANFIAKRSELIAKKNELIAKEEALIKRMESNKLLRE
>Mature_550_residues
MNIYKTKTGVKGLDDVLNGGYIKNEPTLLKGGPGTGKTIFTLFFTHEQLKSNNNVIYITCDESPEKIIAHMDGFNLEGGK
FLQEGKFLILDFTPVLSDEVAGEFNINALLLRIEQAQQKIKANTLIIDSLQSILLGIKNYDPNYELLRLFQWARQKNLTV
LTTMAETQTILQTEIYDEYVVDCAIELKQKVNNDLMTRYLRIIKNRGSSHGTNEYPFSITHKGISLLPITSTKLNTTIPA
EYLRTGIKVLDRMLDNKGYQTGSQIIISGRSGTAKTLFAASFAQSAVRQGRKVLFISFEESPNDLIHHVKSINIDLMKDI
TKKKLHIDSRRSVEMGLEDHIISIIELTEEKQFDVLILDPISSLLDLGNTMEVKRLFIRFISHMKSINKTLFFTELIPDY
SKELTILGLSSLTETWIRLSNVENNGEFNRLIHIAKARGIKTSNQIKEFYVTDKGINIEAPYLGDNQMMFGSQKSAHILR
EKQELQQRKEEIKRLEREITNLTEIQHAQLKIQEANFIAKRSELIAKKNELIAKEEALIKRMESNKLLRE

Specific function: Unknown

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 kaiC domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR010624 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 62786; Mature: 62786

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: PS51146 KAIC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIYKTKTGVKGLDDVLNGGYIKNEPTLLKGGPGTGKTIFTLFFTHEQLKSNNNVIYITC
CCCCCCCCCCCHHHHHHCCCEECCCCEEEECCCCCCCEEEEEEEEHHHHHCCCCEEEEEE
DESPEKIIAHMDGFNLEGGKFLQEGKFLILDFTPVLSDEVAGEFNINALLLRIEQAQQKI
CCCHHHHHHHCCCCCCCCCCHHHCCCEEEEECCHHHHHHCCCCCCCHHHEEEHHHHHHHH
KANTLIIDSLQSILLGIKNYDPNYELLRLFQWARQKNLTVLTTMAETQTILQTEIYDEYV
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHH
VDCAIELKQKVNNDLMTRYLRIIKNRGSSHGTNEYPFSITHKGISLLPITSTKLNTTIPA
HHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCH
EYLRTGIKVLDRMLDNKGYQTGSQIIISGRSGTAKTLFAASFAQSAVRQGRKVLFISFEE
HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECC
SPNDLIHHVKSINIDLMKDITKKKLHIDSRRSVEMGLEDHIISIIELTEEKQFDVLILDP
CHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHCCCCCCCEEEECC
ISSLLDLGNTMEVKRLFIRFISHMKSINKTLFFTELIPDYSKELTILGLSSLTETWIRLS
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHH
NVENNGEFNRLIHIAKARGIKTSNQIKEFYVTDKGINIEAPYLGDNQMMFGSQKSAHILR
CCCCCCCHHHHEEHHHHCCCCCHHHHHEEEEECCCCEEECCCCCCCCEEECCCHHHHHHH
EKQELQQRKEEIKRLEREITNLTEIQHAQLKIQEANFIAKRSELIAKKNELIAKEEALIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
RMESNKLLRE
HHHHHHHCCC
>Mature Secondary Structure
MNIYKTKTGVKGLDDVLNGGYIKNEPTLLKGGPGTGKTIFTLFFTHEQLKSNNNVIYITC
CCCCCCCCCCCHHHHHHCCCEECCCCEEEECCCCCCCEEEEEEEEHHHHHCCCCEEEEEE
DESPEKIIAHMDGFNLEGGKFLQEGKFLILDFTPVLSDEVAGEFNINALLLRIEQAQQKI
CCCHHHHHHHCCCCCCCCCCHHHCCCEEEEECCHHHHHHCCCCCCCHHHEEEHHHHHHHH
KANTLIIDSLQSILLGIKNYDPNYELLRLFQWARQKNLTVLTTMAETQTILQTEIYDEYV
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHH
VDCAIELKQKVNNDLMTRYLRIIKNRGSSHGTNEYPFSITHKGISLLPITSTKLNTTIPA
HHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCH
EYLRTGIKVLDRMLDNKGYQTGSQIIISGRSGTAKTLFAASFAQSAVRQGRKVLFISFEE
HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECC
SPNDLIHHVKSINIDLMKDITKKKLHIDSRRSVEMGLEDHIISIIELTEEKQFDVLILDP
CHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHCCCCCCCEEEECC
ISSLLDLGNTMEVKRLFIRFISHMKSINKTLFFTELIPDYSKELTILGLSSLTETWIRLS
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHH
NVENNGEFNRLIHIAKARGIKTSNQIKEFYVTDKGINIEAPYLGDNQMMFGSQKSAHILR
CCCCCCCHHHHEEHHHHCCCCCHHHHHEEEEECCCCEEECCCCCCCCEEECCCHHHHHHH
EKQELQQRKEEIKRLEREITNLTEIQHAQLKIQEANFIAKRSELIAKKNELIAKEEALIK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
RMESNKLLRE
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]