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The map label for this gene is kaiB [H]

Identifier: 148360206

GI number: 148360206

Start: 1345104

End: 1345376

Strand: Reverse

Name: kaiB [H]

Synonym: LPC_2138

Alternate gene names: 148360206

Gene position: 1345376-1345104 (Counterclockwise)

Preceding gene: 148360205

Following gene: 148360207

Centisome position: 37.62

GC content: 36.63

Gene sequence:

>273_bases
ATGACTCGAACTAAGCTAAAACTGTTTGTGATTGGAAATAGTGCTATATCAAAACGTGCCATTATTAATTTGCAATCGAT
ATGCTCAGATCCCAAGTTTGCAGATTTGTGCGATGTCGAGGTAGTCGATCTATGTAAAAACAAGGAGATAGCAGAACAAG
AAAAAATTCTGGCAACTCCTATACTAATTAAAAAAGAACCCTTGCCTGAACGTCGAATCATCGGTGATTTATCTGATAGA
CAAAAAGTTATTGCTGCTCTGGAAATGGATTAG

Upstream 100 bases:

>100_bases
AAAAGAAGTGAGTTGATTGCTAAAAAAAACGAACTGATTGCTAAAGAAGAAGCGCTGATTAAACGAATGGAGTCCAACAA
ATTGTTAAGAGAGTAAATGA

Downstream 100 bases:

>100_bases
GTGATATCGTGATTTCAAACTACCCTGTAATCACTCAAAACTTCTGGTATCAACTGGTTGAAAAAATGGCTATAGGGGTG
TTGGTGATTAATAATGAAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 89

Protein sequence:

>90_residues
MTRTKLKLFVIGNSAISKRAIINLQSICSDPKFADLCDVEVVDLCKNKEIAEQEKILATPILIKKEPLPERRIIGDLSDR
QKVIAALEMD

Sequences:

>Translated_90_residues
MTRTKLKLFVIGNSAISKRAIINLQSICSDPKFADLCDVEVVDLCKNKEIAEQEKILATPILIKKEPLPERRIIGDLSDR
QKVIAALEMD
>Mature_89_residues
TRTKLKLFVIGNSAISKRAIINLQSICSDPKFADLCDVEVVDLCKNKEIAEQEKILATPILIKKEPLPERRIIGDLSDRQ
KVIAALEMD

Specific function: Component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-non-specific transcription regulator that represses transcription, possibly by acting on the state of

COG id: COG0526

COG function: function code OC; Thiol-disulfide isomerase and thioredoxins

Gene ontology:

Cell location: Cytoplasm. Cell membrane; Peripheral membrane protein. Note=From circadian time (CT) 12-16 to CT 20 the major fraction is membrane-associated, it then translocated to the cytosol, where it probably interacts with kaiC and kaiA [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kaiB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013474
- InterPro:   IPR011649
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF07689 KaiB [H]

EC number: NA

Molecular weight: Translated: 10107; Mature: 9976

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTKLKLFVIGNSAISKRAIINLQSICSDPKFADLCDVEVVDLCKNKEIAEQEKILATP
CCCCEEEEEEECCCCCCHHHHEEHHHHCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHCCC
ILIKKEPLPERRIIGDLSDRQKVIAALEMD
EEEECCCCCCHHHCCCCCCHHHHHEEECCC
>Mature Secondary Structure 
TRTKLKLFVIGNSAISKRAIINLQSICSDPKFADLCDVEVVDLCKNKEIAEQEKILATP
CCCEEEEEEECCCCCCHHHHEEHHHHCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHCCC
ILIKKEPLPERRIIGDLSDRQKVIAALEMD
EEEECCCCCCHHHCCCCCCHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9727980 [H]