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The map label for this gene is ygcI [H]

Identifier: 148260804

GI number: 148260804

Start: 1992942

End: 1993691

Strand: Reverse

Name: ygcI [H]

Synonym: Acry_1810

Alternate gene names: 148260804

Gene position: 1993691-1992942 (Counterclockwise)

Preceding gene: 148260805

Following gene: 148260803

Centisome position: 58.82

GC content: 65.2

Gene sequence:

>750_bases
GTGAAGAGCTTCCTCACTTTCACCCTTTTTGCCCCCATCGCCTCTTTTGGCGCTATTGCCGTGGGGGAGCGGCGCGAGAG
CTGGTCGCGCCCCGCACGATCGGCCGTGCTCGGTCTTGTGGGAGCATGCTTGGGGATTGAGCGGGAAGATGCGGAAGAGC
AGGCTGCCCTCGAGCGTGAGTTTGGCTTTGCCTTGCTCTGCGGCACGTCAGGGGGCTCGCTTGCCGATTTTCACACGCTC
CAGGTCGGCCGCCCAGCCCGTGGCCAGACGTTCCGCACGCGGGCTGAGGAGCTTAACTCGAATACGGTCGACACGATTCT
CACACGGCGTGACTACCGTGTGAGCGCCTGGCATCTTGCAGCACTCTGGGTACGGTCAGAGGTGGATCCCCGCTGGGCGC
TCGAGGATCTAGCCGACGCGATGAAGCAGCCAGCCTTCACACCCTACCTCGGGCGACGCGCATGCCCGCTCGGCCTCCCC
CTCGCGCCGCAGATCATCGATGCCGACAGCCCGGCATCGGCCCTGGACAGGCGATGGGCCAGTGGCCCCGAGGCTGAATT
CCGCCCATCGCTCGCCGGCACGATCCAGGACCTGTTCGTGGCGCGCGACCGATGGGTGGGAGACGAGGGGGCGAACAACC
TGCTCCGCAGCGAAGAGCGGCGGGATGCCCCGATCTCGCGCACCCTATGGCAATTCGGTCTGCGCACAGAGGTCATCGAG
GCATTTTCTCCAACGGAGAATCGGTCATGA

Upstream 100 bases:

>100_bases
AAGGCTTACGGGCCGACGGCCGATGCGACAAAGGTCATGCGTGTTGGTGGCGAGGGCTCTCTGGCTGACATCATTGTCTT
CGCCCGCGAAGGAGTGTGAG

Downstream 100 bases:

>100_bases
GTACGATGTGGCTGTCAAAGGCGCGCTTGAACCACGATCAGAAGGCGGTCGCGGCCCTCGCTTCGGTTCTGGTGCCTGAA
GACGGCTCGGCCCGGGTTGC

Product: CRISPR-associated Cas5 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MKSFLTFTLFAPIASFGAIAVGERRESWSRPARSAVLGLVGACLGIEREDAEEQAALEREFGFALLCGTSGGSLADFHTL
QVGRPARGQTFRTRAEELNSNTVDTILTRRDYRVSAWHLAALWVRSEVDPRWALEDLADAMKQPAFTPYLGRRACPLGLP
LAPQIIDADSPASALDRRWASGPEAEFRPSLAGTIQDLFVARDRWVGDEGANNLLRSEERRDAPISRTLWQFGLRTEVIE
AFSPTENRS

Sequences:

>Translated_249_residues
MKSFLTFTLFAPIASFGAIAVGERRESWSRPARSAVLGLVGACLGIEREDAEEQAALEREFGFALLCGTSGGSLADFHTL
QVGRPARGQTFRTRAEELNSNTVDTILTRRDYRVSAWHLAALWVRSEVDPRWALEDLADAMKQPAFTPYLGRRACPLGLP
LAPQIIDADSPASALDRRWASGPEAEFRPSLAGTIQDLFVARDRWVGDEGANNLLRSEERRDAPISRTLWQFGLRTEVIE
AFSPTENRS
>Mature_249_residues
MKSFLTFTLFAPIASFGAIAVGERRESWSRPARSAVLGLVGACLGIEREDAEEQAALEREFGFALLCGTSGGSLADFHTL
QVGRPARGQTFRTRAEELNSNTVDTILTRRDYRVSAWHLAALWVRSEVDPRWALEDLADAMKQPAFTPYLGRRACPLGLP
LAPQIIDADSPASALDRRWASGPEAEFRPSLAGTIQDLFVARDRWVGDEGANNLLRSEERRDAPISRTLWQFGLRTEVIE
AFSPTENRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082154, Length=211, Percent_Identity=31.7535545023697, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021124
- InterPro:   IPR013422
- InterPro:   IPR010147 [H]

Pfam domain/function: PF09704 Cas_Cas5d [H]

EC number: NA

Molecular weight: Translated: 27577; Mature: 27577

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSFLTFTLFAPIASFGAIAVGERRESWSRPARSAVLGLVGACLGIEREDAEEQAALERE
CCCHHHHHHHHHHHHHCHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
FGFALLCGTSGGSLADFHTLQVGRPARGQTFRTRAEELNSNTVDTILTRRDYRVSAWHLA
CCEEEEEECCCCCCHHHEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCEEHHHHHH
ALWVRSEVDPRWALEDLADAMKQPAFTPYLGRRACPLGLPLAPQIIDADSPASALDRRWA
HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCHHCCCCCCHHHHHHHHC
SGPEAEFRPSLAGTIQDLFVARDRWVGDEGANNLLRSEERRDAPISRTLWQFGLRTEVIE
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
AFSPTENRS
HHCCCCCCC
>Mature Secondary Structure
MKSFLTFTLFAPIASFGAIAVGERRESWSRPARSAVLGLVGACLGIEREDAEEQAALERE
CCCHHHHHHHHHHHHHCHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
FGFALLCGTSGGSLADFHTLQVGRPARGQTFRTRAEELNSNTVDTILTRRDYRVSAWHLA
CCEEEEEECCCCCCHHHEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCEEHHHHHH
ALWVRSEVDPRWALEDLADAMKQPAFTPYLGRRACPLGLPLAPQIIDADSPASALDRRWA
HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCHHCCCCCCHHHHHHHHC
SGPEAEFRPSLAGTIQDLFVARDRWVGDEGANNLLRSEERRDAPISRTLWQFGLRTEVIE
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
AFSPTENRS
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]