Definition Synechococcus sp. RCC307, complete genome.
Accession NC_009482
Length 2,224,914

Click here to switch to the map view.

The map label for this gene is 148243325

Identifier: 148243325

GI number: 148243325

Start: 1931980

End: 1932708

Strand: Direct

Name: 148243325

Synonym: SynRCC307_2226

Alternate gene names: NA

Gene position: 1931980-1932708 (Clockwise)

Preceding gene: 148243323

Following gene: 148243327

Centisome position: 86.83

GC content: 63.51

Gene sequence:

>729_bases
GTGACTGCAACACCCTGGCTCTCCCTGCTGCTCGGGGGTGTTTTGTCCTGCCAAATCCCAGCGGCCCATGCCCAGTTGAG
CGGAGCGCTGGTGGACCAACTGGAGAGCGCACTGAATAACGGTGATGTGAGTGCCCTAGCGGACTTGGTAGCCAGCAGCG
ATGAAATCGGCGGCAGCGAGTTGGAAACCCGCTACAGCCAACTGCGCCGTCAGTTTCCTGATAGCCAATGGACCTTGGCC
GCGGGCCAAGACCTCGCCGATGGGCGCAACACCCTGAACGTGAGCGTGGTGGGCAACGGCAGCCAAGACGGCCGCGACTT
CCGCCTGCAGGCCAGCCAAACCCTGGCGGTGCGTAGTAACGGGCTCACCCTCGGCAGCCAGGAGGTGCTGGCGGAAGAAT
CCATCGTTCGCAGCGGTGAGCGCGATCTAGCGGTGAGTGTGATGGCCCCCGACACGGTGCTAACCGGGCAGCGCTACGAC
CTCGACGTGCTCATGGATGATCCGCTCAAGGACGCAACCTTGGCGGGCGGCTTAACCGAGCTCACCGAAGCGGATCTGCT
GCAGGAGGAGAGCCCTGAGATTGAACTGGGCGCCCTCAATGCCGGCGGCATTTTTAAAACAATCCAGGCCCCGTACCAAC
CCGGGCGCCAAGCCTGGGCAGCCCTGCTGCTGCACCCCGAAGGCACGGTCAGCATCAGCCGCACGGTGCGGGTGGTGAAT
CGTCTTTGA

Upstream 100 bases:

>100_bases
GGAAACAGATGGCCGCCAGTGCCGCTGGCTGCAATCAGAAGCCGAGGCATGGACGCACAAGACGGGGCGCCTAACTTAAG
GATCCCTGCGACGGCGTGCC

Downstream 100 bases:

>100_bases
ACCAGCGCAGCAACGCTGAAACATCTTCCTGGCCGTGGCCTTGCTGCATCAAGCGGTCTTCCATTGCTGCCACCTGCTCG
GTGATCGGCAGCTGAAGCCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MTATPWLSLLLGGVLSCQIPAAHAQLSGALVDQLESALNNGDVSALADLVASSDEIGGSELETRYSQLRRQFPDSQWTLA
AGQDLADGRNTLNVSVVGNGSQDGRDFRLQASQTLAVRSNGLTLGSQEVLAEESIVRSGERDLAVSVMAPDTVLTGQRYD
LDVLMDDPLKDATLAGGLTELTEADLLQEESPEIELGALNAGGIFKTIQAPYQPGRQAWAALLLHPEGTVSISRTVRVVN
RL

Sequences:

>Translated_242_residues
MTATPWLSLLLGGVLSCQIPAAHAQLSGALVDQLESALNNGDVSALADLVASSDEIGGSELETRYSQLRRQFPDSQWTLA
AGQDLADGRNTLNVSVVGNGSQDGRDFRLQASQTLAVRSNGLTLGSQEVLAEESIVRSGERDLAVSVMAPDTVLTGQRYD
LDVLMDDPLKDATLAGGLTELTEADLLQEESPEIELGALNAGGIFKTIQAPYQPGRQAWAALLLHPEGTVSISRTVRVVN
RL
>Mature_241_residues
TATPWLSLLLGGVLSCQIPAAHAQLSGALVDQLESALNNGDVSALADLVASSDEIGGSELETRYSQLRRQFPDSQWTLAA
GQDLADGRNTLNVSVVGNGSQDGRDFRLQASQTLAVRSNGLTLGSQEVLAEESIVRSGERDLAVSVMAPDTVLTGQRYDL
DVLMDDPLKDATLAGGLTELTEADLLQEESPEIELGALNAGGIFKTIQAPYQPGRQAWAALLLHPEGTVSISRTVRVVNR
L

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25664; Mature: 25533

Theoretical pI: Translated: 4.12; Mature: 4.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATPWLSLLLGGVLSCQIPAAHAQLSGALVDQLESALNNGDVSALADLVASSDEIGGSE
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHH
LETRYSQLRRQFPDSQWTLAAGQDLADGRNTLNVSVVGNGSQDGRDFRLQASQTLAVRSN
HHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCEEEEECC
GLTLGSQEVLAEESIVRSGERDLAVSVMAPDTVLTGQRYDLDVLMDDPLKDATLAGGLTE
CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCCCCEEEEECCCCCHHHHHCCHHH
LTEADLLQEESPEIELGALNAGGIFKTIQAPYQPGRQAWAALLLHPEGTVSISRTVRVVN
HHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCCCCHHHHEEEEECCCCCEEHHHHHHHHH
RL
CC
>Mature Secondary Structure 
TATPWLSLLLGGVLSCQIPAAHAQLSGALVDQLESALNNGDVSALADLVASSDEIGGSE
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHH
LETRYSQLRRQFPDSQWTLAAGQDLADGRNTLNVSVVGNGSQDGRDFRLQASQTLAVRSN
HHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCEEEEECC
GLTLGSQEVLAEESIVRSGERDLAVSVMAPDTVLTGQRYDLDVLMDDPLKDATLAGGLTE
CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCCCCEEEEECCCCCHHHHHCCHHH
LTEADLLQEESPEIELGALNAGGIFKTIQAPYQPGRQAWAALLLHPEGTVSISRTVRVVN
HHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCCCCHHHHEEEEECCCCCEEHHHHHHHHH
RL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA