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The map label for this gene is psaD [H]

Identifier: 148243186

GI number: 148243186

Start: 1803884

End: 1804318

Strand: Direct

Name: psaD [H]

Synonym: SynRCC307_2087

Alternate gene names: 148243186

Gene position: 1803884-1804318 (Clockwise)

Preceding gene: 148243185

Following gene: 148243187

Centisome position: 81.08

GC content: 59.08

Gene sequence:

>435_bases
ATGTCCACGGCATCCACTCTCAGCGGCCAGCTCCCGCAGTTCATTGGCAGCACCGGCGGCCTTCTGAACGCTGCTGAAAC
CGAAGAGAAGTACGCGATCACCTGGAACAGCGACTCAGCTCAGGCCTTTGAGTTGCCCACCGGTGGTGCCGCGATGATGA
ACTCTGGCGAGAACATCATGTACTTCGCGCGCAAAGAGCAATGCCTGGCTCTGGGCACCCAGCTGCGCACCCAATTCAAG
CCCCGGATCGAGGACTACAAGATCTACCGGATCTACCCCGGTGGTGACATGGAATTCCTACACCCAGCCGATGGTGTGTT
CCCTGAGAAGGTGAACGAAGGTCGCCCAATGGTGGGCCATAACCCCCGCCGGATCGGCCAAAACACCAATCCCTCCACGA
TCAAGTTCAGCGGCCGCAACACCTTCGACAGCTGA

Upstream 100 bases:

>100_bases
TGCCCCTCGCCAATGTTGAAGGCTGTGAAGAGAACGGCGCCTGAAGCAGGCAGATCGCAGATGAGTGCTAGCTTCCAGCC
ATACCTAACCAAGTGGCTTA

Downstream 100 bases:

>100_bases
ATCAACGGCGCTTGGCGCCACATCCTTTAGAAAGGCGGGTCGAACGACCCGCCTTTTTTTCTGCCAAGCCCTGTGATGGC
CAGTCCCGATCCGACTACCA

Product: photosystem I reaction center subunit II

Products: NA

Alternate protein names: Photosystem I 16 kDa polypeptide; PSI-D [H]

Number of amino acids: Translated: 144; Mature: 143

Protein sequence:

>144_residues
MSTASTLSGQLPQFIGSTGGLLNAAETEEKYAITWNSDSAQAFELPTGGAAMMNSGENIMYFARKEQCLALGTQLRTQFK
PRIEDYKIYRIYPGGDMEFLHPADGVFPEKVNEGRPMVGHNPRRIGQNTNPSTIKFSGRNTFDS

Sequences:

>Translated_144_residues
MSTASTLSGQLPQFIGSTGGLLNAAETEEKYAITWNSDSAQAFELPTGGAAMMNSGENIMYFARKEQCLALGTQLRTQFK
PRIEDYKIYRIYPGGDMEFLHPADGVFPEKVNEGRPMVGHNPRRIGQNTNPSTIKFSGRNTFDS
>Mature_143_residues
STASTLSGQLPQFIGSTGGLLNAAETEEKYAITWNSDSAQAFELPTGGAAMMNSGENIMYFARKEQCLALGTQLRTQFKP
RIEDYKIYRIYPGGDMEFLHPADGVFPEKVNEGRPMVGHNPRRIGQNTNPSTIKFSGRNTFDS

Specific function: PsaD can form complexes with ferredoxin and ferredoxin- oxidoreductase in photosystem I (PS I) reaction center [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psaD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003685 [H]

Pfam domain/function: PF02531 PsaD [H]

EC number: NA

Molecular weight: Translated: 15887; Mature: 15756

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTASTLSGQLPQFIGSTGGLLNAAETEEKYAITWNSDSAQAFELPTGGAAMMNSGENIM
CCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCHHEECCCCEEE
YFARKEQCLALGTQLRTQFKPRIEDYKIYRIYPGGDMEFLHPADGVFPEKVNEGRPMVGH
EEECCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCC
NPRRIGQNTNPSTIKFSGRNTFDS
CHHHCCCCCCCCEEEECCCCCCCC
>Mature Secondary Structure 
STASTLSGQLPQFIGSTGGLLNAAETEEKYAITWNSDSAQAFELPTGGAAMMNSGENIM
CCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCHHEECCCCEEE
YFARKEQCLALGTQLRTQFKPRIEDYKIYRIYPGGDMEFLHPADGVFPEKVNEGRPMVGH
EEECCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCC
NPRRIGQNTNPSTIKFSGRNTFDS
CHHHCCCCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3141423; 8905231; 8536689 [H]