| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148243185
Identifier: 148243185
GI number: 148243185
Start: 1802490
End: 1803827
Strand: Direct
Name: 148243185
Synonym: SynRCC307_2086
Alternate gene names: NA
Gene position: 1802490-1803827 (Clockwise)
Preceding gene: 148243184
Following gene: 148243186
Centisome position: 81.01
GC content: 64.95
Gene sequence:
>1338_bases GTGAGCGCCAACGATTCCCTGCAGACGCTGCGGCAACGCCTGGCAGCAGGGGTTCCCGCCTCAGGCGGCGATGACGCCAG TGCCAGGCGCCAGTGGTGGGCAGCGCTCACGGTTGTGCAGGAGCTGCTGCTGGAGCAGGGCTGCCAGCAGGGGCTGTGGC TGGCAGCGCCACTTCCTGCCTTGCATGAACCCCTGCTCATTAGCCGCTTCCATGGCTGGGTGTGGACCCCGCCGCAATGG AGTGGCCGGGCCCCCGAGCTCCCGGGCAGTGCCGCCAACAACCCAGCCAGCGAGCGCAGCCTCTGGCAGCTGCCGCTGCA AACAGGGGACGGCACCGATCCCTTGCTGCTGCTGATCACGGGCCCACTGCAAGTGGCGATGGCGCTGCATGGGAGTGGCG CCCAACGGCAGCTCTTGGTTCGTTTTGAGCAACCTTTGATCGCCGAACTGCTGCAATCGCTGGGCAATCGCTTGGCCAGC GAGCAGGGCGACGCCGCCAGCGACCTCAAGCACCAAATCCAACAACTGGGCAGCCTGGAAAATTCGCCGCAACTGGCTGA GCAGTTTTGGCCGCGCGTGGCCGTCCAATTGGCCAAGGCCACTCCGAGCCTGACCCTGGTGAGTGCCGCCAGCAACGAAA CCGACGACTCCGATCAACAGCTGGGGCTGCTGGAGGCCATTGCCCATGAAGTGCGCACACCGCTGGCAACGATCCGCACC CTGATTCGCTCACTGCAAAGGCGCTCAGACCTATCTCCCCCGCTGCAAAAGCGCCTGGGACAAATCGACCACGAATGCAG TGAGCAGATCGATCGCTTTGGCTTGATTTTTCAGGCGGCCGAACTGCAGCGCCAACCCAGCCAACAGCGGGCCCTGGCGC GGACCGATCTAGGCGCCTTACTGCCCGGGCTCGAGCAGATCTGGCAACGCCAACTGCAGCGGCGTGATCTGACCCTGGAG CTGGAGCAACCCGAGCAGCTGCCTGCGGTAATGAGCGATCCGGTGTTGCTCGAATCGATGCTGATTGGCCTGATGGACCG CTTTAGCCGCGGACTGCGCCGGGGCGAGAGTGTTCGGGTTGAGCTGGCCTCAGCAGGTGAGCAGCTCAAGCTGCGCTTCA GCGGCGGGCGCGATGACGACGACAGCCCCGGCGACACCGCCAGCGTGGGTCCGGTACTGAGCTGGGACCCAGCCACCGGC AGCCTGCAACTCAGTCAAGCCGCCACCCAGAAGCTGTTCAGCAGCCTTGGCGGGCGCCTCACCGAACGACCTGGCAGCAG CCTGACGTTGTATTTGCCCCTCGCCAATGTTGAAGGCTGTGAAGAGAACGGCGCCTGA
Upstream 100 bases:
>100_bases GGCTTAGTTATGGGCGCTTTGCCCTGCTGGTGAATTTCATGGGCATTGGCCTGGTGGCCTCCGTTGAGCGAGAGGCCCGG CGGGCTCGCATGCGTTTGAA
Downstream 100 bases:
>100_bases AGCAGGCAGATCGCAGATGAGTGCTAGCTTCCAGCCATACCTAACCAAGTGGCTTAATGTCCACGGCATCCACTCTCAGC GGCCAGCTCCCGCAGTTCAT
Product: two component system sensor histidine kinase
Products: NA
Alternate protein names: Two-Component Sensor Histidine Kinase; Sensor Histidine Kinase; Signal Transduction Histidine Kinase; Histidine Kinase A Domain Protein; Two Component System Sensor Histidine Kinase; Sensory Transduction Histidine Kinase
Number of amino acids: Translated: 445; Mature: 444
Protein sequence:
>445_residues MSANDSLQTLRQRLAAGVPASGGDDASARRQWWAALTVVQELLLEQGCQQGLWLAAPLPALHEPLLISRFHGWVWTPPQW SGRAPELPGSAANNPASERSLWQLPLQTGDGTDPLLLLITGPLQVAMALHGSGAQRQLLVRFEQPLIAELLQSLGNRLAS EQGDAASDLKHQIQQLGSLENSPQLAEQFWPRVAVQLAKATPSLTLVSAASNETDDSDQQLGLLEAIAHEVRTPLATIRT LIRSLQRRSDLSPPLQKRLGQIDHECSEQIDRFGLIFQAAELQRQPSQQRALARTDLGALLPGLEQIWQRQLQRRDLTLE LEQPEQLPAVMSDPVLLESMLIGLMDRFSRGLRRGESVRVELASAGEQLKLRFSGGRDDDDSPGDTASVGPVLSWDPATG SLQLSQAATQKLFSSLGGRLTERPGSSLTLYLPLANVEGCEENGA
Sequences:
>Translated_445_residues MSANDSLQTLRQRLAAGVPASGGDDASARRQWWAALTVVQELLLEQGCQQGLWLAAPLPALHEPLLISRFHGWVWTPPQW SGRAPELPGSAANNPASERSLWQLPLQTGDGTDPLLLLITGPLQVAMALHGSGAQRQLLVRFEQPLIAELLQSLGNRLAS EQGDAASDLKHQIQQLGSLENSPQLAEQFWPRVAVQLAKATPSLTLVSAASNETDDSDQQLGLLEAIAHEVRTPLATIRT LIRSLQRRSDLSPPLQKRLGQIDHECSEQIDRFGLIFQAAELQRQPSQQRALARTDLGALLPGLEQIWQRQLQRRDLTLE LEQPEQLPAVMSDPVLLESMLIGLMDRFSRGLRRGESVRVELASAGEQLKLRFSGGRDDDDSPGDTASVGPVLSWDPATG SLQLSQAATQKLFSSLGGRLTERPGSSLTLYLPLANVEGCEENGA >Mature_444_residues SANDSLQTLRQRLAAGVPASGGDDASARRQWWAALTVVQELLLEQGCQQGLWLAAPLPALHEPLLISRFHGWVWTPPQWS GRAPELPGSAANNPASERSLWQLPLQTGDGTDPLLLLITGPLQVAMALHGSGAQRQLLVRFEQPLIAELLQSLGNRLASE QGDAASDLKHQIQQLGSLENSPQLAEQFWPRVAVQLAKATPSLTLVSAASNETDDSDQQLGLLEAIAHEVRTPLATIRTL IRSLQRRSDLSPPLQKRLGQIDHECSEQIDRFGLIFQAAELQRQPSQQRALARTDLGALLPGLEQIWQRQLQRRDLTLEL EQPEQLPAVMSDPVLLESMLIGLMDRFSRGLRRGESVRVELASAGEQLKLRFSGGRDDDDSPGDTASVGPVLSWDPATGS LQLSQAATQKLFSSLGGRLTERPGSSLTLYLPLANVEGCEENGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48461; Mature: 48330
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSANDSLQTLRQRLAAGVPASGGDDASARRQWWAALTVVQELLLEQGCQQGLWLAAPLPA CCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHH LHEPLLISRFHGWVWTPPQWSGRAPELPGSAANNPASERSLWQLPLQTGDGTDPLLLLIT HHCHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCCCCCEEEEEE GPLQVAMALHGSGAQRQLLVRFEQPLIAELLQSLGNRLASEQGDAASDLKHQIQQLGSLE CHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC NSPQLAEQFWPRVAVQLAKATPSLTLVSAASNETDDSDQQLGLLEAIAHEVRTPLATIRT CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHH LIRSLQRRSDLSPPLQKRLGQIDHECSEQIDRFGLIFQAAELQRQPSQQRALARTDLGAL HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH LPGLEQIWQRQLQRRDLTLELEQPEQLPAVMSDPVLLESMLIGLMDRFSRGLRRGESVRV HHHHHHHHHHHHHHCCCEEEECCCHHCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEE ELASAGEQLKLRFSGGRDDDDSPGDTASVGPVLSWDPATGSLQLSQAATQKLFSSLGGRL EHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCEEHHHHHHHHHHHHHCCCC TERPGSSLTLYLPLANVEGCEENGA CCCCCCCEEEEEECCCCCCCCCCCC >Mature Secondary Structure SANDSLQTLRQRLAAGVPASGGDDASARRQWWAALTVVQELLLEQGCQQGLWLAAPLPA CCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHH LHEPLLISRFHGWVWTPPQWSGRAPELPGSAANNPASERSLWQLPLQTGDGTDPLLLLIT HHCHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCCCCCEEEEEE GPLQVAMALHGSGAQRQLLVRFEQPLIAELLQSLGNRLASEQGDAASDLKHQIQQLGSLE CHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC NSPQLAEQFWPRVAVQLAKATPSLTLVSAASNETDDSDQQLGLLEAIAHEVRTPLATIRT CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHH LIRSLQRRSDLSPPLQKRLGQIDHECSEQIDRFGLIFQAAELQRQPSQQRALARTDLGAL HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH LPGLEQIWQRQLQRRDLTLELEQPEQLPAVMSDPVLLESMLIGLMDRFSRGLRRGESVRV HHHHHHHHHHHHHHCCCEEEECCCHHCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEE ELASAGEQLKLRFSGGRDDDDSPGDTASVGPVLSWDPATGSLQLSQAATQKLFSSLGGRL EHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCEEHHHHHHHHHHHHHCCCC TERPGSSLTLYLPLANVEGCEENGA CCCCCCCEEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA