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The map label for this gene is deoC [H]

Identifier: 148242898

GI number: 148242898

Start: 1564334

End: 1565008

Strand: Direct

Name: deoC [H]

Synonym: SynRCC307_1799

Alternate gene names: 148242898

Gene position: 1564334-1565008 (Clockwise)

Preceding gene: 148242897

Following gene: 148242899

Centisome position: 70.31

GC content: 66.22

Gene sequence:

>675_bases
GTGCCTGCCGCGTTCGACCCGGCCGAGATCCCCGATCTCGCCCCACTGATCGACCACGCCCTGCTGCAACCGCGGCTGGG
CAGTGAGCAAATCGAACGCGGCTGCCAGCAGGCCCTGCATTACGGCTTTGCCGGCATCTGCCTGGCCTCGCGCTGGATGC
CGCAAGCCCGCCAGTGGCTCGGAGAGCGCGGCAGCGTTCGCCTGATCAGCGTGCTGAGCTTTCCCTTTGGCGCCTGCAGC
AGTGAGCTGAAGCGCGCTGAAGCCGAAGCCGCCGTGGAAGCTGGCGCCGATGAGCTGGATCTGGTGCCGGACTTTGCCCT
GCTGCTCGATGGCGAGCTCACGGCCTTGCACGATCAAATTGCAGCAGTGGTGGAGCTAGGTCTGCCGCTCAAATTGATCC
TGGAGGCCGATCAACTCACGAGCGACCAGCTGCAGGCCCTGGTGGAGGTTGCCCTCGATGCTGGCGTCGCGTTTCTGAAA
ACCGGAAGTGGCTATGGCCAACCCGCCAGCAGCGCCATGGTGCGGGACTTGCATGGTCTGGCAGCCGGGCGAGCCAAGGT
GAAGGCCTCCGGCGGTATCCGTGATCTGGGCCACGCCATTGAGCTGGTGCAGGCAGGTGCCGAGCGGCTGGGCACCAGCC
GCGGAGTGGAGCTGGTGCAGGCCCAGCGGGAATGA

Upstream 100 bases:

>100_bases
GACTTCTACGTCTTCCGCAATGCCGACAACGGCGAACTTCAGGTGGTGTACCAGCGCAACCACGGCGGATACGGTGTGAT
CGAAGCCCGAAGCTGATGGC

Downstream 100 bases:

>100_bases
GCACACCGCCGCGCGAGCGCACTCTCGAGGGGCTCTGCCTGAAAGCCACACCGCTGGGTGAACAAGACCGCCTGCTGCTG
TTGCTGACCGAAGAAGAGGG

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MPAAFDPAEIPDLAPLIDHALLQPRLGSEQIERGCQQALHYGFAGICLASRWMPQARQWLGERGSVRLISVLSFPFGACS
SELKRAEAEAAVEAGADELDLVPDFALLLDGELTALHDQIAAVVELGLPLKLILEADQLTSDQLQALVEVALDAGVAFLK
TGSGYGQPASSAMVRDLHGLAAGRAKVKASGGIRDLGHAIELVQAGAERLGTSRGVELVQAQRE

Sequences:

>Translated_224_residues
MPAAFDPAEIPDLAPLIDHALLQPRLGSEQIERGCQQALHYGFAGICLASRWMPQARQWLGERGSVRLISVLSFPFGACS
SELKRAEAEAAVEAGADELDLVPDFALLLDGELTALHDQIAAVVELGLPLKLILEADQLTSDQLQALVEVALDAGVAFLK
TGSGYGQPASSAMVRDLHGLAAGRAKVKASGGIRDLGHAIELVQAGAERLGTSRGVELVQAQRE
>Mature_223_residues
PAAFDPAEIPDLAPLIDHALLQPRLGSEQIERGCQQALHYGFAGICLASRWMPQARQWLGERGSVRLISVLSFPFGACSS
ELKRAEAEAAVEAGADELDLVPDFALLLDGELTALHDQIAAVVELGLPLKLILEADQLTSDQLQALVEVALDAGVAFLKT
GSGYGQPASSAMVRDLHGLAAGRAKVKASGGIRDLGHAIELVQAGAERLGTSRGVELVQAQRE

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790841, Length=158, Percent_Identity=31.0126582278481, Blast_Score=67, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 23649; Mature: 23518

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAAFDPAEIPDLAPLIDHALLQPRLGSEQIERGCQQALHYGFAGICLASRWMPQARQWL
CCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
GERGSVRLISVLSFPFGACSSELKRAEAEAAVEAGADELDLVPDFALLLDGELTALHDQI
CCCCCEEEHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHCCCHHHHHHHH
AAVVELGLPLKLILEADQLTSDQLQALVEVALDAGVAFLKTGSGYGQPASSAMVRDLHGL
HHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCHHEEECCCCCCCCHHHHHHHHHHHH
AAGRAKVKASGGIRDLGHAIELVQAGAERLGTSRGVELVQAQRE
HHCCHHEECCCCHHHHHHHHHHHHHHHHHCCCHHCHHHHHHCCC
>Mature Secondary Structure 
PAAFDPAEIPDLAPLIDHALLQPRLGSEQIERGCQQALHYGFAGICLASRWMPQARQWL
CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
GERGSVRLISVLSFPFGACSSELKRAEAEAAVEAGADELDLVPDFALLLDGELTALHDQI
CCCCCEEEHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHCCCHHHHHHHH
AAVVELGLPLKLILEADQLTSDQLQALVEVALDAGVAFLKTGSGYGQPASSAMVRDLHGL
HHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCHHEEECCCCCCCCHHHHHHHHHHHH
AAGRAKVKASGGIRDLGHAIELVQAGAERLGTSRGVELVQAQRE
HHCCHHEECCCCHHHHHHHHHHHHHHHHHCCCHHCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]