Click here to switch to the map view.

The map label for this gene is recO [H]

Identifier: 148242899

GI number: 148242899

Start: 1565005

End: 1565823

Strand: Direct

Name: recO [H]

Synonym: SynRCC307_1800

Alternate gene names: 148242899

Gene position: 1565005-1565823 (Clockwise)

Preceding gene: 148242898

Following gene: 148242900

Centisome position: 70.34

GC content: 66.18

Gene sequence:

>819_bases
ATGAGCACACCGCCGCGCGAGCGCACTCTCGAGGGGCTCTGCCTGAAAGCCACACCGCTGGGTGAACAAGACCGCCTGCT
GCTGTTGCTGACCGAAGAAGAGGGGCTGCTCAAGCTGGCCGCTAGCGGTGCCCGCAAACCGCGCAGCAGCTTGGCCGCTG
CCGGAGCCCTAACGCTGATCAAAGCCCAGGTGGCACGAGGCCGCAGCCTCGATCGGCTGCGCCAAGCCCAGGTGATCCGC
AGCTACAGCCGCCTCGGTGAGCAGCTCGAATTGCTGGCTGCCGGCCAATGGCTGTTGGAGCTGGCACGGCTGCTGATCGC
CGAAGCCGAACCCCTCCCCGGAGCCTTGGCCCTGCTGCTGCACCGGCTCGGACAGCTGGAGGAGTTGCGATCGGCCCCAG
CCGAGGTGCAACGGCTGGAGGCCTTGGCTACAGCCGTGCAGGGCGGCGTTCAGCTGCTGCAACTCGCTGGTCTGGGGCTG
CCGATGAACACCGATCTCAATGGCGGTGGCGATTTGGTGCCGCCGATTGGCAACTGGGAGTGGCGCTGCAGCCTGCTGCC
GGCCGATGGCTTCTGCAGCGGCCGCCAAAGCGGTGCCGTGCTGATGCTCAATGCTTCAGAGCTCGCTCTGTTGCAGCGGT
TGCTGCGGCCCCAACTGCCGCGCAAGCGCGATGGTGAACTGATGGGGCCCGAACGGGTGTGGCTTCACCTGCAGGAGCTG
CTGCAGATCTGGTGCCGTGAACATCTCGGACGCAGTCCCAAAGCATTGACATTGCTGCGGCAGGATTGGCCCGCATCAGC
GCAGCGGCAGAACGGGTGA

Upstream 100 bases:

>100_bases
GCGGTATCCGTGATCTGGGCCACGCCATTGAGCTGGTGCAGGCAGGTGCCGAGCGGCTGGGCACCAGCCGCGGAGTGGAG
CTGGTGCAGGCCCAGCGGGA

Downstream 100 bases:

>100_bases
GCGATCAGGCCCAACAAGGCAGCGGTCTCCAGGCCGTGCTGGCCCTTCCGGGTTTCAGGCTCCTCTGGCTGGGGCAGATC
TTTTCCCAGCTGGCCGACAA

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MSTPPRERTLEGLCLKATPLGEQDRLLLLLTEEEGLLKLAASGARKPRSSLAAAGALTLIKAQVARGRSLDRLRQAQVIR
SYSRLGEQLELLAAGQWLLELARLLIAEAEPLPGALALLLHRLGQLEELRSAPAEVQRLEALATAVQGGVQLLQLAGLGL
PMNTDLNGGGDLVPPIGNWEWRCSLLPADGFCSGRQSGAVLMLNASELALLQRLLRPQLPRKRDGELMGPERVWLHLQEL
LQIWCREHLGRSPKALTLLRQDWPASAQRQNG

Sequences:

>Translated_272_residues
MSTPPRERTLEGLCLKATPLGEQDRLLLLLTEEEGLLKLAASGARKPRSSLAAAGALTLIKAQVARGRSLDRLRQAQVIR
SYSRLGEQLELLAAGQWLLELARLLIAEAEPLPGALALLLHRLGQLEELRSAPAEVQRLEALATAVQGGVQLLQLAGLGL
PMNTDLNGGGDLVPPIGNWEWRCSLLPADGFCSGRQSGAVLMLNASELALLQRLLRPQLPRKRDGELMGPERVWLHLQEL
LQIWCREHLGRSPKALTLLRQDWPASAQRQNG
>Mature_271_residues
STPPRERTLEGLCLKATPLGEQDRLLLLLTEEEGLLKLAASGARKPRSSLAAAGALTLIKAQVARGRSLDRLRQAQVIRS
YSRLGEQLELLAAGQWLLELARLLIAEAEPLPGALALLLHRLGQLEELRSAPAEVQRLEALATAVQGGVQLLQLAGLGLP
MNTDLNGGGDLVPPIGNWEWRCSLLPADGFCSGRQSGAVLMLNASELALLQRLLRPQLPRKRDGELMGPERVWLHLQELL
QIWCREHLGRSPKALTLLRQDWPASAQRQNG

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 29733; Mature: 29602

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPPRERTLEGLCLKATPLGEQDRLLLLLTEEEGLLKLAASGARKPRSSLAAAGALTLI
CCCCCCHHHHCCEEEECCCCCCCCCEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHH
KAQVARGRSLDRLRQAQVIRSYSRLGEQLELLAAGQWLLELARLLIAEAEPLPGALALLL
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
HRLGQLEELRSAPAEVQRLEALATAVQGGVQLLQLAGLGLPMNTDLNGGGDLVPPIGNWE
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
WRCSLLPADGFCSGRQSGAVLMLNASELALLQRLLRPQLPRKRDGELMGPERVWLHLQEL
EEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
LQIWCREHLGRSPKALTLLRQDWPASAQRQNG
HHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
STPPRERTLEGLCLKATPLGEQDRLLLLLTEEEGLLKLAASGARKPRSSLAAAGALTLI
CCCCCHHHHCCEEEECCCCCCCCCEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHH
KAQVARGRSLDRLRQAQVIRSYSRLGEQLELLAAGQWLLELARLLIAEAEPLPGALALLL
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
HRLGQLEELRSAPAEVQRLEALATAVQGGVQLLQLAGLGLPMNTDLNGGGDLVPPIGNWE
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
WRCSLLPADGFCSGRQSGAVLMLNASELALLQRLLRPQLPRKRDGELMGPERVWLHLQEL
EEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
LQIWCREHLGRSPKALTLLRQDWPASAQRQNG
HHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA