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The map label for this gene is lrtA [H]

Identifier: 148242897

GI number: 148242897

Start: 1563766

End: 1564329

Strand: Direct

Name: lrtA [H]

Synonym: SynRCC307_1798

Alternate gene names: 148242897

Gene position: 1563766-1564329 (Clockwise)

Preceding gene: 148242890

Following gene: 148242898

Centisome position: 70.28

GC content: 61.52

Gene sequence:

>564_bases
ATGAAGCTTCTGATCCATGGCCGCAATCTCGAAGTCACGCCCGCGCTGCGGGATTACACCGAAACCAAGCTCTCGCGAGC
GGTGAGTCACTTCAACGGCATGGTGCAGGAAGCCGATGTGCATCTGTCGGTTGCGCGCAACCCGCGGGTGCCGCAGCAAA
CCGCTGAAGTCACCCTGTTTGCTAGCGGCACGGTGATCCGCGCCCAAGAACGCAGCCAGAACCTCTACGCCAGCATTGAT
CTGGTGGCAGGGAAACTGGCCCGCCAGCTGCAACGTCATAAGGACCGCCGCCAAGGCCACGGGCACCACAGTGATCTCCA
GGCCGAGCCCGAAGTGATGCCGCTGCAGGGCGACATGCTCCAAGGCCGTCACGCTGAGTTGCCGGCTCCTGTGGTGCGGC
GGAAGTATTTCGCCATGCCGCCGATGAGCGTGGAAGAAGCGATTCACCAGCTGGAGGTGATCGACCATGACTTCTACGTC
TTCCGCAATGCCGACAACGGCGAACTTCAGGTGGTGTACCAGCGCAACCACGGCGGATACGGTGTGATCGAAGCCCGAAG
CTGA

Upstream 100 bases:

>100_bases
AATTTCCCTGGCGAGAGCACAAAGGAATGCTTCTGGCAATACCCGTTCCATGCCGTCGTCAATACATTGAATTCAACCCA
CATGGCAGTGAGGTGCCGGT

Downstream 100 bases:

>100_bases
TGGCGTGCCTGCCGCGTTCGACCCGGCCGAGATCCCCGATCTCGCCCCACTGATCGACCACGCCCTGCTGCAACCGCGGC
TGGGCAGTGAGCAAATCGAA

Product: light repressed protein A-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MKLLIHGRNLEVTPALRDYTETKLSRAVSHFNGMVQEADVHLSVARNPRVPQQTAEVTLFASGTVIRAQERSQNLYASID
LVAGKLARQLQRHKDRRQGHGHHSDLQAEPEVMPLQGDMLQGRHAELPAPVVRRKYFAMPPMSVEEAIHQLEVIDHDFYV
FRNADNGELQVVYQRNHGGYGVIEARS

Sequences:

>Translated_187_residues
MKLLIHGRNLEVTPALRDYTETKLSRAVSHFNGMVQEADVHLSVARNPRVPQQTAEVTLFASGTVIRAQERSQNLYASID
LVAGKLARQLQRHKDRRQGHGHHSDLQAEPEVMPLQGDMLQGRHAELPAPVVRRKYFAMPPMSVEEAIHQLEVIDHDFYV
FRNADNGELQVVYQRNHGGYGVIEARS
>Mature_187_residues
MKLLIHGRNLEVTPALRDYTETKLSRAVSHFNGMVQEADVHLSVARNPRVPQQTAEVTLFASGTVIRAQERSQNLYASID
LVAGKLARQLQRHKDRRQGHGHHSDLQAEPEVMPLQGDMLQGRHAELPAPVVRRKYFAMPPMSVEEAIHQLEVIDHDFYV
FRNADNGELQVVYQRNHGGYGVIEARS

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=100, Percent_Identity=35, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 21176; Mature: 21176

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLIHGRNLEVTPALRDYTETKLSRAVSHFNGMVQEADVHLSVARNPRVPQQTAEVTLF
CEEEEECCCEEECHHHHHHHHHHHHHHHHHHHCCCEECCEEEEECCCCCCCCCCCEEEEE
ASGTVIRAQERSQNLYASIDLVAGKLARQLQRHKDRRQGHGHHSDLQAEPEVMPLQGDML
ECCEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCC
QGRHAELPAPVVRRKYFAMPPMSVEEAIHQLEVIDHDFYVFRNADNGELQVVYQRNHGGY
CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCE
GVIEARS
EEEEECC
>Mature Secondary Structure
MKLLIHGRNLEVTPALRDYTETKLSRAVSHFNGMVQEADVHLSVARNPRVPQQTAEVTLF
CEEEEECCCEEECHHHHHHHHHHHHHHHHHHHCCCEECCEEEEECCCCCCCCCCCEEEEE
ASGTVIRAQERSQNLYASIDLVAGKLARQLQRHKDRRQGHGHHSDLQAEPEVMPLQGDML
ECCEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCC
QGRHAELPAPVVRRKYFAMPPMSVEEAIHQLEVIDHDFYVFRNADNGELQVVYQRNHGGY
CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCE
GVIEARS
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]