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The map label for this gene is sodB [H]

Identifier: 148242890

GI number: 148242890

Start: 1555535

End: 1556134

Strand: Direct

Name: sodB [H]

Synonym: SynRCC307_1791

Alternate gene names: 148242890

Gene position: 1555535-1556134 (Clockwise)

Preceding gene: 148242889

Following gene: 148242897

Centisome position: 69.91

GC content: 61.5

Gene sequence:

>600_bases
ATGGCCCACACCCTCCCTGTTCTGCCTTACGCGCTCGATGCTCTCGAGCCTCATATCTCCCGCCAGACCCTGGAGTTTCA
CCACGGCAAGCACCACGCTGGCTACGTGAACAACCTCAACAAGCTTGTGGAAGGCACCGATCTCGACGGCAAGAGCATCG
AGGACACCATCACCGCCGTGGCCGGTAACGCCGAGAAGGCTGGCGTGTTCAACAACGCCGCCCAGGTGTGGAACCACAGC
TTCTACTGGCAGTGCATCAAGCCCGGTGGCGGCGGCCAGCCCACCGGCGCCCTGGCCGACAAAATCAACGCTGACTTCGG
CAGCTTTGAGAAGTTCATCGAAGCTTTCAAAGCCGCTGGCGCCACCCAGTTCGGCAGCGGTTGGGCCTGGCTGGTGCTCG
ACAACGGCACCCTCAAGGTGACCAAGACCGCCAACGCCGATCTGCCCTTGGCTCACGGCCAGAAGGCTCTGCTCACCATG
GATGTCTGGGAGCACGCTTACTACCTGGATTACCAGAACCGCCGCCCCGATTACATCACCACCTACCTCGAGAAGCTGGT
GAACTGGGACTTCGTGGCTGCCAACTTCGCCGCTGCCTGA

Upstream 100 bases:

>100_bases
AAGGTGCAGGGCAACTGAACCGGCCGGTTATCCCCACGCCTAGGCGACAGTGGAGGACCGGAGTCCATCGTTAAGATCGC
CGCGACCGTTTGATCCGGCC

Downstream 100 bases:

>100_bases
TTCAGCAGCCAAGTGATCAGCCGGCCCCCGCAACAGCGGGGGCTTTTTTTATGGCTGCCGGCTGCACTCAGGCGGGATCC
ACATGGCATCGCCATAGGAA

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MAHTLPVLPYALDALEPHISRQTLEFHHGKHHAGYVNNLNKLVEGTDLDGKSIEDTITAVAGNAEKAGVFNNAAQVWNHS
FYWQCIKPGGGGQPTGALADKINADFGSFEKFIEAFKAAGATQFGSGWAWLVLDNGTLKVTKTANADLPLAHGQKALLTM
DVWEHAYYLDYQNRRPDYITTYLEKLVNWDFVAANFAAA

Sequences:

>Translated_199_residues
MAHTLPVLPYALDALEPHISRQTLEFHHGKHHAGYVNNLNKLVEGTDLDGKSIEDTITAVAGNAEKAGVFNNAAQVWNHS
FYWQCIKPGGGGQPTGALADKINADFGSFEKFIEAFKAAGATQFGSGWAWLVLDNGTLKVTKTANADLPLAHGQKALLTM
DVWEHAYYLDYQNRRPDYITTYLEKLVNWDFVAANFAAA
>Mature_198_residues
AHTLPVLPYALDALEPHISRQTLEFHHGKHHAGYVNNLNKLVEGTDLDGKSIEDTITAVAGNAEKAGVFNNAAQVWNHSF
YWQCIKPGGGGQPTGALADKINADFGSFEKFIEAFKAAGATQFGSGWAWLVLDNGTLKVTKTANADLPLAHGQKALLTMD
VWEHAYYLDYQNRRPDYITTYLEKLVNWDFVAANFAAA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=200, Percent_Identity=43, Blast_Score=153, Evalue=1e-37,
Organism=Homo sapiens, GI67782305, Length=200, Percent_Identity=43, Blast_Score=153, Evalue=1e-37,
Organism=Homo sapiens, GI67782309, Length=201, Percent_Identity=37.3134328358209, Blast_Score=114, Evalue=5e-26,
Organism=Escherichia coli, GI1787946, Length=199, Percent_Identity=54.7738693467337, Blast_Score=223, Evalue=6e-60,
Organism=Escherichia coli, GI1790342, Length=208, Percent_Identity=48.0769230769231, Blast_Score=171, Evalue=2e-44,
Organism=Caenorhabditis elegans, GI17506561, Length=200, Percent_Identity=40.5, Blast_Score=130, Evalue=4e-31,
Organism=Caenorhabditis elegans, GI17569479, Length=199, Percent_Identity=40.2010050251256, Blast_Score=128, Evalue=2e-30,
Organism=Saccharomyces cerevisiae, GI6321796, Length=208, Percent_Identity=38.9423076923077, Blast_Score=112, Evalue=5e-26,
Organism=Drosophila melanogaster, GI17136812, Length=200, Percent_Identity=38.5, Blast_Score=129, Evalue=2e-30,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21865; Mature: 21733

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHTLPVLPYALDALEPHISRQTLEFHHGKHHAGYVNNLNKLVEGTDLDGKSIEDTITAV
CCCCCCCHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHH
AGNAEKAGVFNNAAQVWNHSFYWQCIKPGGGGQPTGALADKINADFGSFEKFIEAFKAAG
CCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCC
ATQFGSGWAWLVLDNGTLKVTKTANADLPLAHGQKALLTMDVWEHAYYLDYQNRRPDYIT
CCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCEEEEEHHHHHHEEEEECCCCCCHHHH
TYLEKLVNWDFVAANFAAA
HHHHHHHCCCCEECCCCCC
>Mature Secondary Structure 
AHTLPVLPYALDALEPHISRQTLEFHHGKHHAGYVNNLNKLVEGTDLDGKSIEDTITAV
CCCCCCHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHH
AGNAEKAGVFNNAAQVWNHSFYWQCIKPGGGGQPTGALADKINADFGSFEKFIEAFKAAG
CCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCC
ATQFGSGWAWLVLDNGTLKVTKTANADLPLAHGQKALLTMDVWEHAYYLDYQNRRPDYIT
CCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCEEEEEHHHHHHEEEEECCCCCCHHHH
TYLEKLVNWDFVAANFAAA
HHHHHHHCCCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]