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The map label for this gene is thf1 [H]

Identifier: 148242504

GI number: 148242504

Start: 1250303

End: 1251016

Strand: Direct

Name: thf1 [H]

Synonym: SynRCC307_1405

Alternate gene names: 148242504

Gene position: 1250303-1251016 (Clockwise)

Preceding gene: 148242502

Following gene: 148242507

Centisome position: 56.2

GC content: 59.52

Gene sequence:

>714_bases
ATGGTCTTGAGCAACCCGCAAACCGTTGCCGACAGCAAGCGCCGTTTTTACGCCGCCTACCCCCATGTCATCCCCGGTCT
CTACCGGCGGGTGGTGGATGAATTGTTGGTGGAGTTGCACCTGCTCGCTGGGCAGGCCGGCTTCCAGGCCGATTCGCTGT
TTGCGATGGGGCTCACCCAAGTGTTCGACAACCTGATGCAGGGGTTCAAACCTGCTGAACGTCAGAAGGAGCTGTTTGCG
GCGATCTGCTCTGGAGCTGGCCTAAAGGCGGATCAACTACGCAAAGACGCCAAGCAGCTCAGGGAGCATCTGGTTCCCCA
TGGCGAAGCCGAAATCAAATCCTGGATCGAGCAGCAGGGCCAAGGAGCACCGGATGTGCTCAAGCACGTCTTACAGCAGG
CAGGCCGCAGCGATTTCCACTACTCACGCCTGCATGCCGTTGGGCTGATGGGGCTGCTGCAAGACCTCAGCGGTGGCGAT
GACCAAGATCCCCAAGCCTTGCAAGAGCGGGCGCACCAATTGGGGCACAGTATGGGATTGCAGAAAGACAAACTGCAGAA
AGACATGGGCCTCTATGCCAGCAATCTGGAGAAGATGTCGCAGGCCGTGGAGTTACTCGAGGAAACCGTGGCTGCTGAAC
GCCGCAAGCGCGAGCAGCGTCAGGGTGAACCTGCTTCTGCTGCCACAGGCCAAGTGAGCGAGCCGGCCAGCTGA

Upstream 100 bases:

>100_bases
CCTCGATCACGATGGGAATCATGGGGACATCAGGTCAGATAGGGCGATCTTACCGACGAAAACCAGGACTCTGAGCGCTA
AGGTCTCAGTCCTGCAGAGC

Downstream 100 bases:

>100_bases
GCGGGGCCACCGCTTTGATGCGCTGGCTGCCACTCGGCATCCAGTTGCTGCAGACCGCCCCACAACGCAGGTAGCCCTAC
CGGCAGCAACTGCAGCTGCT

Product: Thf1-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MVLSNPQTVADSKRRFYAAYPHVIPGLYRRVVDELLVELHLLAGQAGFQADSLFAMGLTQVFDNLMQGFKPAERQKELFA
AICSGAGLKADQLRKDAKQLREHLVPHGEAEIKSWIEQQGQGAPDVLKHVLQQAGRSDFHYSRLHAVGLMGLLQDLSGGD
DQDPQALQERAHQLGHSMGLQKDKLQKDMGLYASNLEKMSQAVELLEETVAAERRKREQRQGEPASAATGQVSEPAS

Sequences:

>Translated_237_residues
MVLSNPQTVADSKRRFYAAYPHVIPGLYRRVVDELLVELHLLAGQAGFQADSLFAMGLTQVFDNLMQGFKPAERQKELFA
AICSGAGLKADQLRKDAKQLREHLVPHGEAEIKSWIEQQGQGAPDVLKHVLQQAGRSDFHYSRLHAVGLMGLLQDLSGGD
DQDPQALQERAHQLGHSMGLQKDKLQKDMGLYASNLEKMSQAVELLEETVAAERRKREQRQGEPASAATGQVSEPAS
>Mature_237_residues
MVLSNPQTVADSKRRFYAAYPHVIPGLYRRVVDELLVELHLLAGQAGFQADSLFAMGLTQVFDNLMQGFKPAERQKELFA
AICSGAGLKADQLRKDAKQLREHLVPHGEAEIKSWIEQQGQGAPDVLKHVLQQAGRSDFHYSRLHAVGLMGLLQDLSGGD
DQDPQALQERAHQLGHSMGLQKDKLQKDMGLYASNLEKMSQAVELLEETVAAERRKREQRQGEPASAATGQVSEPAS

Specific function: May be involved in photosynthetic membrane biogenesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the THF1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017499 [H]

Pfam domain/function: PF11264 ThylakoidFormat [H]

EC number: NA

Molecular weight: Translated: 26176; Mature: 26176

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLSNPQTVADSKRRFYAAYPHVIPGLYRRVVDELLVELHLLAGQAGFQADSLFAMGLTQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
VFDNLMQGFKPAERQKELFAAICSGAGLKADQLRKDAKQLREHLVPHGEAEIKSWIEQQG
HHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
QGAPDVLKHVLQQAGRSDFHYSRLHAVGLMGLLQDLSGGDDQDPQALQERAHQLGHSMGL
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
QKDKLQKDMGLYASNLEKMSQAVELLEETVAAERRKREQRQGEPASAATGQVSEPAS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVLSNPQTVADSKRRFYAAYPHVIPGLYRRVVDELLVELHLLAGQAGFQADSLFAMGLTQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
VFDNLMQGFKPAERQKELFAAICSGAGLKADQLRKDAKQLREHLVPHGEAEIKSWIEQQG
HHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
QGAPDVLKHVLQQAGRSDFHYSRLHAVGLMGLLQDLSGGDDQDPQALQERAHQLGHSMGL
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
QKDKLQKDMGLYASNLEKMSQAVELLEETVAAERRKREQRQGEPASAATGQVSEPAS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12917642 [H]